Variant report
| Variant | rs11716151 |
|---|---|
| Chromosome Location | chr3:159237797-159237798 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:159236194..159237893-chr3:159238621..159241336,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11716700 | 0.81[AMR][1000 genomes] |
| rs1387696 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs16830403 | 0.91[YRI][hapmap] |
| rs17742826 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17798987 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17799197 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17799227 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs2365928 | 0.81[AMR][1000 genomes] |
| rs28570455 | 0.94[EUR][1000 genomes] |
| rs34565770 | 0.81[AMR][1000 genomes] |
| rs61794710 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61794722 | 0.85[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs61794723 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61794727 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs61794729 | 0.83[ASN][1000 genomes] |
| rs6787578 | 1.00[CEU][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes] |
| rs7614617 | 0.84[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv877695 | chr3:159152259-159254385 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv877696 | chr3:159184569-159257961 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv877697 | chr3:159198139-159259124 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
