Variant report

Variant	rs11716246
Chromosome Location	chr3:51484914-51484915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11712780	0.88[ASN][1000 genomes]
rs11715034	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11720298	0.87[ASN][1000 genomes]
rs56175329	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7623949	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51458200-51489400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:51458200-51515000	Weak transcription	Fetal Brain Male	brain
3	chr3:51458400-51500200	Weak transcription	Psoas Muscle	Psoas
4	chr3:51458800-51503800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:51467800-51502000	Weak transcription	HMEC	breast
6	chr3:51467800-51524000	Weak transcription	Small Intestine	intestine
7	chr3:51470600-51498400	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:51472000-51498000	Weak transcription	NHEK	skin
9	chr3:51474200-51497600	Weak transcription	Ovary	ovary
10	chr3:51475800-51495800	Weak transcription	Fetal Kidney	kidney
11	chr3:51475800-51496200	Weak transcription	Spleen	Spleen
12	chr3:51475800-51498600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:51475800-51499200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:51475800-51500400	Weak transcription	K562	blood
15	chr3:51476000-51488200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:51476000-51489200	Weak transcription	Thymus	Thymus
17	chr3:51476000-51489400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:51476000-51489600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:51476000-51490000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:51476000-51490000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:51476000-51495800	Weak transcription	Brain Angular Gyrus	brain
22	chr3:51476000-51496200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:51476000-51496200	Weak transcription	Left Ventricle	heart
24	chr3:51476000-51496200	Weak transcription	Pancreas	Pancrea
25	chr3:51476000-51496200	Weak transcription	HUVEC	blood vessel
26	chr3:51476000-51497000	Weak transcription	NHDF-Ad	bronchial
27	chr3:51476000-51497200	Weak transcription	Hela-S3	cervix
28	chr3:51476000-51497400	Weak transcription	Brain Substantia Nigra	brain
29	chr3:51476000-51497600	Weak transcription	Aorta	Aorta
30	chr3:51476000-51497600	Weak transcription	Gastric	stomach
31	chr3:51476000-51498600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr3:51476000-51499800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:51476000-51506000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr3:51476200-51489200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr3:51476200-51495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:51476200-51495800	Weak transcription	Lung	lung
37	chr3:51476200-51500000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr3:51476200-51500200	Weak transcription	Osteobl	bone
39	chr3:51476400-51485200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr3:51476400-51489000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr3:51476400-51489200	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:51476400-51490000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:51476400-51495600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:51476400-51496200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:51476400-51497400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:51476600-51485200	Weak transcription	Fetal Intestine Small	intestine
47	chr3:51476600-51490000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:51476600-51496200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:51476600-51497600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr3:51477000-51490000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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