Variant report

Variant	rs11716811
Chromosome Location	chr3:178897144-178897145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178866142..178869111-chr3:178896590..178898676,2	MCF-7	breast:
2	chr3:178896021..178899660-chr3:178900904..178904164,4	K562	blood:
3	chr3:178892192..178894702-chr3:178896410..178899147,2	K562	blood:
4	chr3:178896594..178898172-chr3:178937850..178940381,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121879	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56285562	1.00[ASN][1000 genomes]
rs56748382	1.00[ASN][1000 genomes]
rs73187218	1.00[ASN][1000 genomes]
rs73187223	1.00[ASN][1000 genomes]
rs73187225	1.00[ASN][1000 genomes]
rs7638525	1.00[ASN][1000 genomes]
rs7651371	1.00[ASN][1000 genomes]
rs7651373	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178867800-178900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:178869200-178898000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:178877400-178897800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:178883800-178905800	Weak transcription	Fetal Kidney	kidney
5	chr3:178887200-178912000	Weak transcription	Thymus	Thymus
6	chr3:178888000-178898800	Weak transcription	Fetal Brain Male	brain
7	chr3:178892800-178897800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:178893000-178897600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:178893000-178898200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:178893000-178900200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:178893400-178898000	Weak transcription	HUVEC	blood vessel
12	chr3:178893400-178898000	Weak transcription	NH-A	brain
13	chr3:178893400-178898200	Weak transcription	GM12878-XiMat	blood
14	chr3:178893600-178898000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:178893800-178897400	Weak transcription	Osteobl	bone
16	chr3:178893800-178897600	Weak transcription	NHDF-Ad	bronchial
17	chr3:178893800-178900800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:178894000-178897400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:178894200-178897600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:178894200-178898200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:178894200-178899000	Weak transcription	Primary B cells from cord blood	blood
22	chr3:178894200-178905800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:178894400-178903400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:178895400-178899000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr3:178895600-178899200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:178895600-178904400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:178895800-178897200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr3:178896000-178897800	Enhancers	Fetal Stomach	stomach
29	chr3:178896200-178897200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr3:178896200-178900000	Enhancers	Primary T cells from cord blood	blood
31	chr3:178896200-178900600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr3:178896200-178903600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:178896400-178897200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr3:178896400-178897200	Enhancers	Brain Cingulate Gyrus	brain
35	chr3:178896400-178897200	Enhancers	Small Intestine	intestine
36	chr3:178896400-178898000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr3:178896400-178900000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:178896400-178902800	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr3:178896400-178905000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr3:178896600-178897600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:178896600-178897800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:178896600-178897800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:178896600-178898600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:178896600-178898600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:178896600-178898800	Enhancers	Fetal Lung	lung
46	chr3:178896600-178899000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr3:178896600-178899200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr3:178896600-178900000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr3:178896600-178900600	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr3:178896600-178900800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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