The 2.0 version of rSNPBase

Variant report

Variant rs11716852
Chromosome Location chr3:179527449-179527450
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179493800-179528200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr3:179498400-179528800 Weak transcription Fetal Brain Male brain
3 chr3:179504000-179534800 Weak transcription Fetal Brain Female brain
4 chr3:179504000-179537400 Weak transcription Brain Germinal Matrix brain
5 chr3:179517400-179530000 Strong transcription Dnd41 blood
6 chr3:179519800-179528200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr3:179519800-179528600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr3:179519800-179528600 Weak transcription HSMM muscle
9 chr3:179519800-179528800 Weak transcription NHDF-Ad bronchial
10 chr3:179519800-179529200 Weak transcription HMEC breast
11 chr3:179519800-179529600 Weak transcription NHLF lung
12 chr3:179520200-179529000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr3:179524200-179528000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr3:179524400-179528600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr3:179524400-179528600 Weak transcription HSMMtube muscle
16 chr3:179524600-179528200 Weak transcription Muscle Satellite Cultured Cells --
17 chr3:179524600-179528400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr3:179524600-179528400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr3:179524600-179528600 Weak transcription Osteobl bone
20 chr3:179524600-179528800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr3:179524600-179528800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr3:179524800-179528400 Strong transcription Brain Hippocampus Middle brain
23 chr3:179525000-179528600 Strong transcription Brain Inferior Temporal Lobe brain
24 chr3:179525800-179529600 Weak transcription Pancreas Pancrea
25 chr3:179527000-179527600 Enhancers HepG2 liver
26 chr3:179527000-179529600 Weak transcription Ovary ovary
27 chr3:179527400-179528400 Weak transcription Brain Angular Gyrus brain
28 chr3:179527400-179528800 Weak transcription Brain Substantia Nigra brain
29 chr3:179527400-179529000 Weak transcription Brain Anterior Caudate brain
30 chr3:179527400-179529000 Weak transcription Brain Cingulate Gyrus brain
31 chr3:179527400-179529000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015