Variant report

Variant	rs11716959
Chromosome Location	chr3:42870908-42870909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:42866915..42869697-chr3:42869826..42874147,5	K562	blood:
2	chr3:42863648..42866062-chr3:42870307..42872848,2	K562	blood:
3	chr3:42621913..42623887-chr3:42869494..42872391,2	MCF-7	breast:
4	chr3:42819275..42824150-chr3:42869754..42873104,6	MCF-7	breast:
5	chr3:42795565..42797413-chr3:42869940..42872735,2	MCF-7	breast:
6	chr3:42866999..42869697-chr3:42869826..42873026,3	K562	blood:
7	chr3:42860498..42863136-chr3:42870179..42871848,2	K562	blood:
8	chr3:42598680..42600793-chr3:42870781..42872933,2	MCF-7	breast:
9	chr3:42854558..42863000-chr3:42863307..42874321,18	MCF-7	breast:
10	chr3:42869285..42872521-chr3:42879502..42882815,4	MCF-7	breast:
11	chr3:42823380..42825503-chr3:42869037..42871310,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000008324	Chromatin interaction
ENSG00000144648	Chromatin interaction
ENSG00000093183	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7653015	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847016	chr3:42855765-42880490	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42861600-42873000	Weak transcription	Esophagus	oesophagus
2	chr3:42861600-42885400	Weak transcription	Pancreas	Pancrea
3	chr3:42861800-42872600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:42862400-42872800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:42863000-42871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:42865400-42871000	Weak transcription	Adipose Nuclei	Adipose
7	chr3:42865400-42872200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:42868400-42874200	Enhancers	Liver	Liver
9	chr3:42868600-42873200	Enhancers	HMEC	breast
10	chr3:42869000-42871200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr3:42869000-42872400	Enhancers	Stomach Mucosa	stomach
12	chr3:42869400-42877000	Weak transcription	K562	blood
13	chr3:42869800-42871400	Enhancers	Colonic Mucosa	Colon
14	chr3:42869800-42871400	Enhancers	Placenta	Placenta
15	chr3:42870200-42871400	Enhancers	Hela-S3	cervix
16	chr3:42870200-42871800	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr3:42870400-42871200	Enhancers	A549	lung
18	chr3:42870400-42871400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:42870400-42871400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:42870400-42871600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:42870400-42871800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:42870400-42871800	Flanking Active TSS	HepG2	liver
23	chr3:42870400-42872000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:42870600-42871200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr3:42870600-42871400	Enhancers	NHEK	skin
26	chr3:42870600-42872400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr3:42870600-42874400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:42870800-42872200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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