Variant report

Variant	rs11718786
Chromosome Location	chr3:54820798-54820799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1820616	1.00[CEU][hapmap]
rs525736	1.00[CEU][hapmap]
rs630987	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54807600-54836000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:54815600-54823800	Weak transcription	Aorta	Aorta
3	chr3:54815800-54828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:54816000-54826000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:54820400-54825200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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