Variant report

Variant	rs11719129
Chromosome Location	chr3:47294454-47294455
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11922925	0.80[AFR][1000 genomes]
rs1874264	0.80[AFR][1000 genomes]
rs6772449	0.81[AFR][1000 genomes]
rs6778687	0.83[AFR][1000 genomes]
rs6787210	0.80[AFR][1000 genomes]
rs6808117	0.80[AFR][1000 genomes]
rs7639121	0.83[AFR][1000 genomes]
rs7643150	0.80[AFR][1000 genomes]
rs7643181	0.80[AFR][1000 genomes]
rs7649413	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1007714	chr3:47084387-47331570	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1014457	chr3:47222292-47335175	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv536560	chr3:47222292-47335175	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47264200-47322200	Weak transcription	Gastric	stomach
2	chr3:47267200-47308000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:47270800-47307800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:47271400-47308000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:47276400-47305200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:47277600-47300400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:47282200-47300400	Weak transcription	Fetal Intestine Small	intestine
8	chr3:47282200-47300600	Weak transcription	Lung	lung
9	chr3:47282800-47322400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:47284800-47300400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:47285400-47315800	Weak transcription	Pancreas	Pancrea
12	chr3:47285600-47312400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:47286400-47299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:47287400-47299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:47293600-47302800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:47293600-47323200	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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