Variant report

Variant	rs11720364
Chromosome Location	chr3:43186832-43186833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11719635	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv3784	chr3:43176397-43221254	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43184400-43188600	Weak transcription	HepG2	liver
2	chr3:43186200-43187000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:43186200-43187000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:43186200-43187400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:43186200-43187400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:43186400-43187000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:43186400-43187200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:43186400-43187400	Enhancers	HUVEC	blood vessel
9	chr3:43186600-43187200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:43186600-43187600	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:43186800-43187000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:43186800-43187400	Enhancers	Osteobl	bone
13	chr3:43186800-43187600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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