Variant report

Variant	rs11721382
Chromosome Location	chr4:133022641-133022642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10000954	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10016920	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10017947	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10018156	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10028810	0.88[EUR][1000 genomes]
rs10518608	0.85[EUR][1000 genomes]
rs11099176	0.84[EUR][1000 genomes]
rs11723924	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11939243	0.83[EUR][1000 genomes]
rs12505866	0.84[EUR][1000 genomes]
rs13102781	0.84[EUR][1000 genomes]
rs13125080	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13125252	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13127269	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13140388	0.85[EUR][1000 genomes]
rs13146836	0.84[EUR][1000 genomes]
rs13147043	0.84[EUR][1000 genomes]
rs13148276	0.87[EUR][1000 genomes]
rs13151910	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1431685	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1431686	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1431687	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1431688	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1876054	0.85[EUR][1000 genomes]
rs1910875	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3962500	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4470643	0.86[EUR][1000 genomes]
rs4502692	0.87[EUR][1000 genomes]
rs4863866	0.82[EUR][1000 genomes]
rs4863867	0.83[EUR][1000 genomes]
rs4863868	0.85[EUR][1000 genomes]
rs4864099	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4864103	0.85[EUR][1000 genomes]
rs62317333	0.85[EUR][1000 genomes]
rs714188	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs905896	0.85[EUR][1000 genomes]
rs958901	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879990	chr4:132783846-133045796	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879997	chr4:132880203-133045796	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470073	chr4:132902055-133101094	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1031888	chr4:132903485-133355824	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv880000	chr4:132932856-133022641	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595444	chr4:132937315-133045796	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv880002	chr4:132970231-133082999	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3418832	chr4:133001896-133038728	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3362873	chr4:133004396-133039207	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv595445	chr4:133022641-133338765	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:133021800-133023200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:133022000-133023400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:133022600-133023600	Enhancers	NHDF-Ad	bronchial

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