Variant report

Variant	rs11721554
Chromosome Location	chr4:78289027-78289028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10016230	0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[AMR][1000 genomes]
rs12498728	0.87[CEU][hapmap]
rs12500776	0.86[CEU][hapmap]
rs12501577	0.87[CEU][hapmap]
rs12502346	0.85[AMR][1000 genomes]
rs12503990	0.85[AMR][1000 genomes]
rs1806786	0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[AMR][1000 genomes]
rs1962168	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1962351	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28413838	0.85[AMR][1000 genomes]
rs28437320	0.83[AMR][1000 genomes]
rs28454139	0.83[AMR][1000 genomes]
rs28522639	0.85[AMR][1000 genomes]
rs2866287	0.85[AMR][1000 genomes]
rs2866288	0.85[AMR][1000 genomes]
rs2866290	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28711853	0.85[AMR][1000 genomes]
rs4282207	0.88[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes]
rs4579145	0.88[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes]
rs55905288	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57104380	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67084501	0.85[AMR][1000 genomes]
rs67714872	0.85[AMR][1000 genomes]
rs67955395	0.85[AMR][1000 genomes]
rs72648568	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72648575	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72864744	0.83[AMR][1000 genomes]
rs7674431	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7695052	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7695467	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9990691	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006017	chr4:78139780-78312974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1010450	chr4:78182037-78317840	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004824	chr4:78188691-78312974	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000447	chr4:78191608-78291173	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845782	chr4:78237955-78321598	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1000392	chr4:78273146-78301467	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1011607	chr4:78273146-78302096	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3442840	chr4:78277532-78309591	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78287200-78289200	Enhancers	Fetal Muscle Leg	muscle
2	chr4:78287800-78289600	Enhancers	Fetal Thymus	thymus
3	chr4:78288400-78289400	Enhancers	Primary B cells from peripheral blood	blood

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