Variant report

Variant	rs11721782
Chromosome Location	chr4:153049058-153049059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10030518	0.91[ASN][1000 genomes]
rs11099843	0.91[ASN][1000 genomes]
rs11721407	0.91[ASN][1000 genomes]
rs11726930	0.91[ASN][1000 genomes]
rs11727862	0.91[ASN][1000 genomes]
rs11733393	0.84[ASN][1000 genomes]
rs11733971	0.91[ASN][1000 genomes]
rs11736628	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11737156	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13112841	0.95[ASN][1000 genomes]
rs13131134	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2406622	0.95[ASN][1000 genomes]
rs2406625	0.91[ASN][1000 genomes]
rs2897478	0.95[ASN][1000 genomes]
rs34069606	0.91[ASN][1000 genomes]
rs34276148	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34909306	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35296212	0.91[ASN][1000 genomes]
rs4557238	0.91[ASN][1000 genomes]
rs56780740	0.89[ASN][1000 genomes]
rs61226564	0.91[ASN][1000 genomes]
rs6535839	0.91[ASN][1000 genomes]
rs6535840	0.91[ASN][1000 genomes]
rs6823091	0.91[ASN][1000 genomes]
rs6833264	0.95[ASN][1000 genomes]
rs6837375	0.91[ASN][1000 genomes]
rs6843947	0.91[ASN][1000 genomes]
rs6848307	0.82[ASN][1000 genomes]
rs7662581	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7671283	0.87[ASN][1000 genomes]
rs7674458	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7675252	0.95[ASN][1000 genomes]
rs7675481	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7682931	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153046800-153050200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:153048200-153049400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:153048200-153049800	Weak transcription	Fetal Thymus	thymus
4	chr4:153048200-153059200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:153048800-153051800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:153049000-153052400	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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