Variant report

Variant	rs11721928
Chromosome Location	chr4:91655219-91655220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11722954	0.82[EUR][1000 genomes]
rs11726378	0.82[EUR][1000 genomes]
rs11727861	0.87[EUR][1000 genomes]
rs11733475	0.81[CEU][hapmap]
rs11930648	1.00[YRI][hapmap]
rs11936755	1.00[YRI][hapmap]
rs11938319	1.00[YRI][hapmap]
rs11940770	1.00[YRI][hapmap]
rs11942077	1.00[YRI][hapmap]
rs11942944	1.00[YRI][hapmap]
rs17186106	0.87[EUR][1000 genomes]
rs2123959	1.00[ASW][hapmap]
rs60604680	0.88[EUR][1000 genomes]
rs62312979	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62312993	0.88[EUR][1000 genomes]
rs7660801	0.87[CEU][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs7667003	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs7670293	1.00[ASW][hapmap];0.87[CEU][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879547	chr4:91546380-91661217	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879548	chr4:91558486-91661217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv4420	chr4:91616307-91661796	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91650000-91660000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:91655000-91658200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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