The 2.0 version of rSNPBase

Variant report

Variant rs117219667
Chromosome Location chr10:98047959-98047960
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:98045400-98048000 Weak transcription Gastric stomach
2 chr10:98045400-98048200 Enhancers Colonic Mucosa Colon
3 chr10:98045600-98049800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr10:98045600-98052800 Weak transcription HUES6 Cell Line embryonic stem cell
5 chr10:98045600-98053000 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr10:98046200-98048400 Enhancers Breast Myoepithelial Primary Cells Breast
7 chr10:98046400-98048600 Enhancers Dnd41 blood
8 chr10:98046600-98048200 Enhancers Primary Natural Killer cells fromperipheralblood blood
9 chr10:98046600-98050800 Enhancers Fetal Thymus thymus
10 chr10:98046800-98049400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr10:98047000-98048000 Enhancers Rectal Smooth Muscle rectum
12 chr10:98047000-98048200 Enhancers Fetal Lung lung
13 chr10:98047000-98048200 Enhancers NHEK skin
14 chr10:98047000-98048400 Enhancers Primary T helper cells PMA-I stimulated --
15 chr10:98047000-98048400 Enhancers HMEC breast
16 chr10:98047000-98048600 Enhancers Primary T helper cells fromperipheralblood blood
17 chr10:98047000-98050400 Enhancers Placenta Placenta
18 chr10:98047200-98048200 Enhancers Primary hematopoietic stem cells short term culture blood
19 chr10:98047200-98048200 Enhancers Stomach Smooth Muscle stomach
20 chr10:98047200-98048400 Enhancers Primary T killer naive cells fromperipheralblood blood
21 chr10:98047200-98048400 Enhancers Skeletal Muscle Male skeletal muscle
22 chr10:98047200-98048600 Enhancers Primary T killer memory cells from peripheral blood blood
23 chr10:98047200-98048600 Enhancers Duodenum Smooth Muscle Duodenum
24 chr10:98047200-98048600 Enhancers Monocytes-CD14+_RO01746 blood
25 chr10:98047200-98048800 Enhancers Primary monocytes fromperipheralblood blood
26 chr10:98047400-98048000 Active TSS Pancreatic Islets Pancreatic Islet
27 chr10:98047400-98048200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr10:98047400-98048200 Active TSS Rectal Mucosa Donor 29 rectum
29 chr10:98047400-98048200 Flanking Active TSS Thymus Thymus
30 chr10:98047400-98048400 Enhancers Placenta Amnion Placenta Amnion
31 chr10:98047400-98048600 Flanking Active TSS Primary hematopoietic stem cells blood
32 chr10:98047400-98048600 Active TSS GM12878-XiMat blood
33 chr10:98047600-98048000 Active TSS Primary B cells from peripheral blood blood
34 chr10:98047600-98048000 Active TSS Fetal Intestine Small intestine
35 chr10:98047600-98048000 Enhancers Rectal Mucosa Donor 31 rectum
36 chr10:98047600-98048200 Enhancers H9 Cell Line embryonic stem cell
37 chr10:98047600-98048200 Enhancers iPS-15b Cell Line embryonic stem cell
38 chr10:98047600-98048400 Active TSS Fetal Intestine Large intestine
39 chr10:98047600-98048800 Enhancers Duodenum Mucosa Duodenum
40 chr10:98047800-98048000 Flanking Active TSS Primary B cells from cord blood blood
41 chr10:98047800-98048200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr10:98047800-98048200 Flanking Active TSS Primary T cells from cord blood blood
43 chr10:98047800-98048200 Enhancers Primary T helper naive cells fromperipheralblood blood
44 chr10:98047800-98048200 Flanking Active TSS Fetal Kidney kidney
45 chr10:98047800-98048200 Enhancers Skeletal Muscle Female skeletal muscle
46 chr10:98047800-98048400 Flanking Active TSS Liver Liver
47 chr10:98047800-98048400 Active TSS HepG2 liver

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Last update: Aug 31, 2015