Variant report
| Variant | rs11723357 |
|---|---|
| Chromosome Location | chr4:21879778-21879779 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10000092 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10023378 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs10028678 | 0.92[ASN][1000 genomes] |
| rs10029164 | 0.92[ASN][1000 genomes] |
| rs10155094 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12640849 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12649683 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs1513566 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs1606537 | 0.92[ASN][1000 genomes] |
| rs16872048 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs16872074 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs17569897 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2323161 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs28476598 | 0.89[ASN][1000 genomes] |
| rs28485804 | 0.92[ASN][1000 genomes] |
| rs28593399 | 0.92[ASN][1000 genomes] |
| rs28633789 | 0.92[ASN][1000 genomes] |
| rs4697246 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4697247 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs56695493 | 0.89[ASN][1000 genomes] |
| rs57592786 | 0.91[ASN][1000 genomes] |
| rs58741960 | 0.92[ASN][1000 genomes] |
| rs58985230 | 0.91[ASN][1000 genomes] |
| rs60554782 | 0.92[ASN][1000 genomes] |
| rs907790 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2757924 | chr4:21873204-21980559 | Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2759231 | chr4:21873204-21980559 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv428440 | chr4:21873204-21980559 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21875600-21880800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr4:21875800-21880600 | Weak transcription | Muscle Satellite Cultured Cells | -- |
