Variant report
| Variant | rs11724066 |
|---|---|
| Chromosome Location | chr4:121574259-121574260 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:121574015..121575886-chr4:121579540..121581895,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10015102 | 1.00[ASN][1000 genomes] |
| rs10021802 | 0.94[ASN][1000 genomes] |
| rs10024244 | 1.00[ASN][1000 genomes] |
| rs12510719 | 1.00[ASN][1000 genomes] |
| rs13119281 | 0.96[ASN][1000 genomes] |
| rs13119501 | 0.96[ASN][1000 genomes] |
| rs13143781 | 0.96[ASN][1000 genomes] |
| rs13148589 | 1.00[ASN][1000 genomes] |
| rs13148854 | 0.91[ASN][1000 genomes] |
| rs1353471 | 0.94[ASN][1000 genomes] |
| rs1496274 | 1.00[ASN][1000 genomes] |
| rs1580743 | 0.94[ASN][1000 genomes] |
| rs1845826 | 0.94[ASN][1000 genomes] |
| rs1845827 | 0.94[ASN][1000 genomes] |
| rs1874442 | 0.96[ASN][1000 genomes] |
| rs4833174 | 0.94[ASN][1000 genomes] |
| rs4833175 | 0.94[ASN][1000 genomes] |
| rs4833660 | 0.94[ASN][1000 genomes] |
| rs4833661 | 0.94[ASN][1000 genomes] |
| rs4833662 | 0.94[ASN][1000 genomes] |
| rs4833663 | 0.94[ASN][1000 genomes] |
| rs4833665 | 1.00[ASN][1000 genomes] |
| rs4833666 | 0.94[ASN][1000 genomes] |
| rs6534204 | 0.96[ASN][1000 genomes] |
| rs732128 | 1.00[ASN][1000 genomes] |
| rs7437685 | 0.96[ASN][1000 genomes] |
| rs7667818 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7669360 | 0.94[ASN][1000 genomes] |
| rs937357 | 1.00[ASN][1000 genomes] |
| rs937358 | 1.00[ASN][1000 genomes] |
| rs9998784 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879852 | chr4:121108734-121768496 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv998094 | chr4:121504565-122374203 | Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004485 | chr4:121542992-121716769 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:121570000-121577400 | Weak transcription | Aorta | Aorta |
