Variant report

Variant	rs11724226
Chromosome Location	chr4:149324067-149324068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12711260	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13109808	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13109933	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13112423	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13127625	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13137655	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13144019	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1512325	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1512327	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512341	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2137331	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6831212	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696770	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs992556	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
4	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:149313200-149326400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:149315800-149326400	Weak transcription	Right Ventricle	heart
7	chr4:149318600-149326400	Weak transcription	Right Atrium	heart
8	chr4:149318600-149327400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:149319000-149339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:149319200-149326400	Weak transcription	Left Ventricle	heart
12	chr4:149319200-149326400	Weak transcription	Psoas Muscle	Psoas
13	chr4:149319200-149327200	Weak transcription	Fetal Stomach	stomach
14	chr4:149319200-149335000	Weak transcription	Esophagus	oesophagus
15	chr4:149319200-149339200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:149319400-149326400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:149319400-149334600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:149320400-149326200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:149321000-149326200	Weak transcription	Stomach Mucosa	stomach
21	chr4:149321200-149326400	Weak transcription	Fetal Heart	heart
22	chr4:149321400-149328000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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