Variant report

Variant	rs11724732
Chromosome Location	chr4:147164470-147164471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:147164316..147165957-chr4:147168018..147169690,2	K562	blood:
2	chr4:146857394..146859298-chr4:147163388..147165123,2	MCF-7	breast:
3	chr4:147096162..147099903-chr4:147161380..147165203,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-6L6.2.1-1	chr4:147164338-147164821	XLOC_003723

Variant related genes	Relation type
ENSG00000164167	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1036016	0.94[CHD][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs12500344	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17021282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17757522	1.00[YRI][hapmap]
rs60175110	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147162200-147164600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:147162200-147164600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:147162200-147167400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:147162200-147167600	Enhancers	Fetal Lung	lung
5	chr4:147162200-147167600	Enhancers	Fetal Muscle Leg	muscle
6	chr4:147162400-147164800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr4:147162400-147165400	Enhancers	GM12878-XiMat	blood
8	chr4:147162600-147164600	Enhancers	Fetal Muscle Trunk	muscle
9	chr4:147162600-147165000	Enhancers	Fetal Stomach	stomach
10	chr4:147162600-147167000	Enhancers	Placenta	Placenta
11	chr4:147162800-147165200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:147163200-147164600	Enhancers	NH-A	brain
13	chr4:147163200-147165000	Enhancers	HMEC	breast
14	chr4:147163200-147165400	Enhancers	Small Intestine	intestine
15	chr4:147163200-147166400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:147163200-147178000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr4:147163400-147164600	Enhancers	NHDF-Ad	bronchial
18	chr4:147163400-147164800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:147163400-147165000	Enhancers	Left Ventricle	heart
20	chr4:147163400-147165200	Enhancers	Gastric	stomach
21	chr4:147163400-147166200	Enhancers	Right Ventricle	heart
22	chr4:147163600-147164600	Enhancers	Colonic Mucosa	Colon
23	chr4:147163600-147164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:147163600-147164800	Enhancers	Duodenum Mucosa	Duodenum
25	chr4:147163600-147165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:147163600-147166200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:147163600-147167200	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr4:147163600-147167200	Enhancers	Stomach Mucosa	stomach
29	chr4:147163800-147164600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr4:147163800-147164600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:147163800-147164600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:147163800-147164600	Enhancers	Brain Angular Gyrus	brain
33	chr4:147163800-147164600	Enhancers	Brain Substantia Nigra	brain
34	chr4:147163800-147164600	Enhancers	Osteobl	bone
35	chr4:147163800-147164800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:147163800-147164800	Enhancers	Brain Cingulate Gyrus	brain
37	chr4:147163800-147164800	Enhancers	Brain Germinal Matrix	brain
38	chr4:147163800-147164800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:147163800-147164800	Enhancers	Rectal Smooth Muscle	rectum
40	chr4:147163800-147164800	Enhancers	HUVEC	blood vessel
41	chr4:147163800-147165000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr4:147163800-147165000	Active TSS	Brain Anterior Caudate	brain
43	chr4:147163800-147165400	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr4:147163800-147166200	Weak transcription	Aorta	Aorta
45	chr4:147163800-147166600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:147163800-147166600	Weak transcription	A549	lung
47	chr4:147163800-147166800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr4:147163800-147176000	Weak transcription	HSMM	muscle
49	chr4:147164000-147164800	Enhancers	Ovary	ovary
50	chr4:147164000-147165000	Enhancers	Brain Hippocampus Middle	brain

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