Variant report

Variant	rs11725121
Chromosome Location	chr4:85581178-85581179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85504642..85507062-chr4:85579993..85581642,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12502409	0.83[EUR][1000 genomes]
rs13108722	0.82[EUR][1000 genomes]
rs16995920	0.80[EUR][1000 genomes]
rs3747680	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6816534	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6825852	0.80[EUR][1000 genomes]
rs6838727	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85526800-85583000	Weak transcription	Gastric	stomach
2	chr4:85529400-85581600	Weak transcription	Ovary	ovary
3	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:85564800-85587800	Weak transcription	Fetal Kidney	kidney
5	chr4:85568800-85589600	Weak transcription	Brain Angular Gyrus	brain
6	chr4:85569200-85587200	Weak transcription	Brain Anterior Caudate	brain
7	chr4:85569600-85582600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:85571000-85588800	Weak transcription	Left Ventricle	heart
9	chr4:85571000-85592400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:85571200-85581400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:85572200-85587800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:85573200-85588600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:85573400-85582400	Weak transcription	Fetal Heart	heart
14	chr4:85577200-85587800	Weak transcription	HSMMtube	muscle
15	chr4:85577600-85592400	Weak transcription	Aorta	Aorta
16	chr4:85578200-85589400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:85579000-85589400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:85579400-85590200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:85579600-85581600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:85579600-85590400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:85579800-85589400	Weak transcription	Fetal Brain Female	brain
22	chr4:85580200-85581600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr4:85580400-85581400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:85580400-85584200	Enhancers	Fetal Intestine Large	intestine
25	chr4:85580400-85589400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:85580600-85581200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:85580600-85581200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:85580800-85581600	Enhancers	Duodenum Mucosa	Duodenum
29	chr4:85580800-85582000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:85580800-85582200	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:85580800-85587200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr4:85580800-85587600	Weak transcription	HSMM	muscle
33	chr4:85581000-85581600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:85581000-85581600	Weak transcription	Esophagus	oesophagus
35	chr4:85581000-85584000	Enhancers	HepG2	liver
36	chr4:85581000-85584200	Enhancers	Fetal Intestine Small	intestine

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