Variant report

Variant	rs117252428
Chromosome Location	chr11:58253999-58254000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv976518	chr11:58247628-58271109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3461630	chr11:58253556-58254131	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3461607	chr11:58253607-58254103	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3461619	chr11:58253608-58254077	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3461641	chr11:58253695-58254027	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58252400-58265200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:58253200-58254400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:58253400-58254000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:58253400-58254000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:58253600-58254000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:58253600-58254200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:58253600-58254200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:58253600-58254800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr11:58253800-58254000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr11:58253800-58254200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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