Variant report

Variant	rs11725255
Chromosome Location	chr4:98088096-98088097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11097552	0.89[ASN][1000 genomes]
rs11721540	0.87[ASN][1000 genomes]
rs11721581	0.87[ASN][1000 genomes]
rs11727665	0.92[ASN][1000 genomes]
rs11942998	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12641508	0.87[ASN][1000 genomes]
rs12643319	0.89[ASN][1000 genomes]
rs12644668	0.92[ASN][1000 genomes]
rs13105512	0.89[ASN][1000 genomes]
rs13111598	0.87[ASN][1000 genomes]
rs13138320	0.94[ASN][1000 genomes]
rs13143522	0.89[ASN][1000 genomes]
rs28452709	0.82[ASN][1000 genomes]
rs34317866	0.94[ASN][1000 genomes]
rs35412870	0.92[ASN][1000 genomes]
rs4235429	0.82[ASN][1000 genomes]
rs4373162	0.94[ASN][1000 genomes]
rs4431230	0.87[ASN][1000 genomes]
rs4635822	0.87[ASN][1000 genomes]
rs4699305	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4699306	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4699546	0.92[ASN][1000 genomes]
rs6820487	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98086200-98089600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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