Variant report

Variant	rs11725335
Chromosome Location	chr4:7641511-7641512
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10212709	0.93[ASN][1000 genomes]
rs2158276	0.93[ASN][1000 genomes]
rs2285790	0.93[ASN][1000 genomes]
rs4689148	0.90[ASN][1000 genomes]
rs4689149	0.90[ASN][1000 genomes]
rs4689813	0.90[ASN][1000 genomes]
rs4689814	0.90[ASN][1000 genomes]
rs4689815	0.90[ASN][1000 genomes]
rs56022132	0.93[ASN][1000 genomes]
rs7674184	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679741	0.90[ASN][1000 genomes]
rs7685583	0.93[ASN][1000 genomes]
rs9991951	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878571	chr4:7637297-7743283	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3327364	chr4:7639352-7644150	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3430783	chr4:7640052-7643150	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3427504	chr4:7640052-7643450	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3365716	chr4:7640252-7643350	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7633200-7643800	Weak transcription	Brain Anterior Caudate	brain
2	chr4:7633400-7644400	Weak transcription	Ovary	ovary
3	chr4:7633800-7646000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:7634600-7644200	Weak transcription	Brain Substantia Nigra	brain
5	chr4:7634600-7644800	Weak transcription	Brain Angular Gyrus	brain
6	chr4:7634600-7645000	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:7635000-7641600	Weak transcription	Fetal Brain Male	brain
8	chr4:7635000-7644600	Weak transcription	Brain Germinal Matrix	brain
9	chr4:7635200-7645000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:7636800-7646000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:7639200-7641800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:7639800-7642600	Enhancers	HepG2	liver
13	chr4:7640200-7642000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr4:7640400-7641600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr4:7640600-7641800	Enhancers	Lung	lung
16	chr4:7641000-7645800	Weak transcription	Fetal Stomach	stomach
17	chr4:7641200-7642200	ZNF genes & repeats	Esophagus	oesophagus
18	chr4:7641200-7643600	Weak transcription	Fetal Intestine Small	intestine
19	chr4:7641200-7646000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr4:7641400-7642000	Active TSS	Fetal Lung	lung
21	chr4:7641400-7642200	ZNF genes & repeats	Fetal Kidney	kidney
22	chr4:7641400-7642800	Enhancers	Primary monocytes fromperipheralblood	blood

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