Variant report

Variant	rs117262341
Chromosome Location	chr9:24500359-24500360
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752290	chr9:24131800-24544900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2753670	chr9:24332200-24532400	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv533263	chr9:24386546-24942407	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1032395	chr9:24396046-24945219	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1030066	chr9:24419824-24500828	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv613850	chr9:24424199-24539632	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv892797	chr9:24428847-24511918	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv870357	chr9:24449398-24555784	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1027072	chr9:24459843-24554174	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv2757328	chr9:24467996-24528103	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv2759682	chr9:24467996-24528103	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv892801	chr9:24488294-24671257	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv6506	chr9:24490866-24516126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	nsv613852	chr9:24491587-24516727	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv1792862	chr9:24493958-24519023	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	esv2609822	chr9:24494744-24509947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv831529	chr9:24495736-24635767	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	esv2650857	chr9:24496274-24511019	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	esv1959068	chr9:24496390-24510310	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv515135	chr9:24497668-24508286	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
21	esv1791738	chr9:24497680-24508238	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
22	esv1793338	chr9:24497680-24508238	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
23	nsv442138	chr9:24497680-24508238	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
24	nsv1034407	chr9:24497684-24517670	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
25	nsv1025544	chr9:24497684-24519672	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
26	esv2764136	chr9:24497684-24520194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
27	nsv1020648	chr9:24498592-24517670	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
28	esv1803760	chr9:24499920-24521038	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24495000-24502200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:24495800-24504200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:24496000-24501000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:24497200-24502400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:24497600-24502600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:24498000-24502600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:24499000-24503400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:24499200-24501200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:24499400-24502000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:24499400-24502200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:24499400-24502400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:24499600-24500600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:24499600-24500800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr9:24499800-24501400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:24500000-24502000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links