Variant report

Variant	rs11726808
Chromosome Location	chr4:130089052-130089053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11098998	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11098999	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11099000	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11725918	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734122	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933725	0.81[CEU][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs12502722	0.88[ASN][1000 genomes]
rs13123966	0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs1827606	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6814153	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130088800-130089200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr4:130088800-130089200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:130088800-130089200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr4:130088800-130089200	Bivalent Enhancer	Liver	Liver
5	chr4:130088800-130089200	Flanking Active TSS	Fetal Heart	heart
6	chr4:130088800-130089200	Active TSS	Fetal Stomach	stomach
7	chr4:130088800-130089200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr4:130088800-130089200	Active TSS	K562	blood
9	chr4:130088800-130089400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr4:130089000-130089200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr4:130089000-130089200	Bivalent Enhancer	Stomach Mucosa	stomach
12	chr4:130089000-130089400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr4:130089000-130089400	Enhancers	Gastric	stomach
14	chr4:130089000-130089400	Enhancers	Left Ventricle	heart
15	chr4:130089000-130089400	Enhancers	Psoas Muscle	Psoas
16	chr4:130089000-130089600	Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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