Variant report

Variant	rs11726817
Chromosome Location	chr4:119740384-119740385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119737903..119740730-chr4:119756784..119758412,2	MCF-7	breast:
2	chr4:119740294..119743255-chr4:119744635..119746441,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150961	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10015015	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv516777	chr4:119733366-119762951	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119705200-119748200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:119718400-119756000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:119718600-119744200	Weak transcription	Hela-S3	cervix
4	chr4:119718600-119753600	Weak transcription	Fetal Heart	heart
5	chr4:119719000-119756200	Weak transcription	Fetal Brain Male	brain
6	chr4:119724000-119748200	Weak transcription	Psoas Muscle	Psoas
7	chr4:119727000-119744000	Weak transcription	Stomach Mucosa	stomach
8	chr4:119732000-119748000	Weak transcription	Right Atrium	heart
9	chr4:119732000-119755800	Weak transcription	Brain Angular Gyrus	brain
10	chr4:119733400-119740400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:119733400-119753200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr4:119734400-119748200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:119734800-119755800	Weak transcription	Thymus	Thymus
14	chr4:119735400-119748200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:119735600-119748200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:119735600-119748200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:119735600-119756000	Weak transcription	Brain Anterior Caudate	brain
18	chr4:119735600-119756200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:119735800-119751400	Weak transcription	Fetal Brain Female	brain
20	chr4:119736200-119744400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:119736200-119748000	Weak transcription	K562	blood
22	chr4:119736400-119744400	Weak transcription	Right Ventricle	heart
23	chr4:119736400-119748200	Weak transcription	A549	lung
24	chr4:119736400-119756200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr4:119736800-119742800	Weak transcription	Fetal Thymus	thymus
26	chr4:119736800-119743000	Weak transcription	Primary B cells from cord blood	blood
27	chr4:119736800-119744200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:119736800-119744200	Weak transcription	Small Intestine	intestine
29	chr4:119736800-119744800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr4:119736800-119746800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:119736800-119753000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:119736800-119755800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:119736800-119756200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:119736800-119756200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:119736800-119756200	Weak transcription	Brain Substantia Nigra	brain
36	chr4:119737000-119742800	Weak transcription	Esophagus	oesophagus
37	chr4:119737000-119742800	Weak transcription	Gastric	stomach
38	chr4:119737000-119742800	Weak transcription	Left Ventricle	heart
39	chr4:119737000-119742800	Weak transcription	Lung	lung
40	chr4:119737000-119742800	Weak transcription	Spleen	Spleen
41	chr4:119737000-119743000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr4:119737000-119743200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr4:119737000-119744000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:119737000-119744200	Weak transcription	Brain Hippocampus Middle	brain
45	chr4:119737000-119744200	Weak transcription	HMEC	breast
46	chr4:119737000-119744400	Weak transcription	Colonic Mucosa	Colon
47	chr4:119737000-119744400	Weak transcription	Colon Smooth Muscle	Colon
48	chr4:119737000-119745400	Weak transcription	Ovary	ovary
49	chr4:119737000-119748000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr4:119737000-119755800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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