Variant report

Variant	rs1172686
Chromosome Location	chr13:93431619-93431620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10467334	0.80[AMR][1000 genomes]
rs10507996	0.91[GIH][hapmap]
rs1172683	0.84[AMR][1000 genomes]
rs1177741	0.86[JPT][hapmap];0.81[YRI][hapmap]
rs1570973	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16947861	0.91[GIH][hapmap]
rs2094188	0.80[AMR][1000 genomes]
rs7329664	0.80[AMR][1000 genomes]
rs73623853	0.80[AMR][1000 genomes]
rs73630967	0.80[AMR][1000 genomes]
rs9301838	0.80[AMR][1000 genomes]
rs9589631	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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