Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10023167	0.84[ASN][1000 genomes]
rs11721407	0.89[AMR][1000 genomes]
rs11721471	0.84[ASN][1000 genomes]
rs11726930	0.88[AMR][1000 genomes]
rs11727862	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11732677	1.00[CEU][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11733393	0.82[AMR][1000 genomes]
rs11733971	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11736628	0.90[AMR][1000 genomes]
rs11737156	0.90[AMR][1000 genomes]
rs13112841	0.84[AMR][1000 genomes]
rs13131134	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17276520	0.80[AMR][1000 genomes]
rs17361391	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1986740	0.84[ASN][1000 genomes]
rs2406622	0.88[AMR][1000 genomes]
rs34069606	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34276148	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34771630	0.80[AMR][1000 genomes]
rs34909306	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35296212	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56780740	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6535843	0.84[ASN][1000 genomes]
rs6849420	0.84[ASN][1000 genomes]
rs6858062	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72736219	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7662581	0.90[AMR][1000 genomes]
rs7674458	0.89[AMR][1000 genomes]
rs7675481	0.89[AMR][1000 genomes]
rs7682931	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv968016	chr4:153090362-153094972	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11727188	RNF175	cis	parietal	SCAN
rs11727188	RP11-18H21.1	cis	Whole Blood	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153086000-153094400	Weak transcription	Aorta	Aorta
2	chr4:153090000-153090800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:153090200-153091000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:153090200-153091000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:153090200-153091000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:153090200-153091000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:153090200-153091000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:153090200-153091200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:153090400-153091000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:153090600-153091000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:153090600-153091000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:153090600-153091200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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