Variant report

Variant	rs11727586
Chromosome Location	chr4:56266882-56266883
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56266067..56267699-chr4:56271922..56273908,2	MCF-7	breast:
2	chr4:56211148..56230966-chr4:56256626..56269458,54	MCF-7	breast:
3	chr4:56211242..56218739-chr4:56258356..56267013,28	MCF-7	breast:
4	chr4:56211281..56215987-chr4:56257992..56268538,18	K562	blood:
5	chr4:56210761..56214527-chr4:56265668..56271169,8	K562	blood:
6	chr4:56206647..56208292-chr4:56265434..56267347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128039	Chromatin interaction
ENSG00000251111	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs471546	0.85[EUR][1000 genomes]
rs480531	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4864984	0.83[EUR][1000 genomes]
rs491381	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs504836	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs505861	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs530875	0.82[EUR][1000 genomes]
rs532768	0.86[EUR][1000 genomes]
rs534654	0.86[EUR][1000 genomes]
rs549564	0.86[EUR][1000 genomes]
rs566240	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6554276	0.82[EUR][1000 genomes]
rs711533	0.86[EUR][1000 genomes]
rs73236137	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7664496	0.83[EUR][1000 genomes]
rs7669259	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7692795	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv999477	chr4:56219035-56397180	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv537101	chr4:56219035-56397180	Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1011722	chr4:56261349-56325600	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv3513387	chr4:56265445-56270643	Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3513386	chr4:56265495-56269293	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv3513388	chr4:56265495-56269293	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv20248	chr4:56266121-56267944	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56264200-56267400	Enhancers	Small Intestine	intestine
2	chr4:56264200-56269800	Weak transcription	Spleen	Spleen
3	chr4:56264200-56270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:56264200-56273000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:56264600-56270000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:56264800-56269800	Weak transcription	Fetal Kidney	kidney
7	chr4:56264800-56282200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:56264800-56292200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:56265000-56267000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:56265000-56273200	Weak transcription	Gastric	stomach
11	chr4:56265400-56273400	Weak transcription	Aorta	Aorta
12	chr4:56265600-56267000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:56265600-56267000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:56265600-56267200	Weak transcription	HepG2	liver
15	chr4:56265600-56268200	Strong transcription	HSMM	muscle
16	chr4:56265600-56269200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:56265600-56269200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:56265600-56269200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:56265600-56269200	Weak transcription	HSMMtube	muscle
20	chr4:56265600-56269800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:56265600-56269800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:56265600-56269800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:56265600-56269800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:56265600-56269800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:56265600-56270200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr4:56265600-56270200	Weak transcription	Lung	lung
27	chr4:56265600-56270200	Weak transcription	Thymus	Thymus
28	chr4:56265600-56271400	Weak transcription	Psoas Muscle	Psoas
29	chr4:56265600-56271800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr4:56265600-56272000	Weak transcription	Esophagus	oesophagus
31	chr4:56265600-56272200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:56265600-56273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:56265600-56273800	Weak transcription	Stomach Mucosa	stomach
34	chr4:56265600-56275600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:56265600-56281600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:56265600-56283800	Weak transcription	Fetal Brain Male	brain
37	chr4:56265600-56286000	Weak transcription	Colonic Mucosa	Colon
38	chr4:56265600-56289800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr4:56265600-56319800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr4:56265800-56267000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr4:56265800-56267000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr4:56265800-56267000	Weak transcription	Adipose Nuclei	Adipose
43	chr4:56265800-56267000	Weak transcription	Liver	Liver
44	chr4:56265800-56267000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr4:56265800-56267000	Weak transcription	A549	lung
46	chr4:56265800-56267000	Weak transcription	Hela-S3	cervix
47	chr4:56265800-56267800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:56265800-56267800	Strong transcription	Osteobl	bone
49	chr4:56265800-56268000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:56265800-56269400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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