Variant report

Variant	rs11728060
Chromosome Location	chr4:86190356-86190357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11097049	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11939907	0.81[AMR][1000 genomes]
rs11941989	0.81[AMR][1000 genomes]
rs11946273	0.81[AMR][1000 genomes]
rs12502364	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1453065	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1453066	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1453067	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1453068	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1597897	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1901752	0.92[ASN][1000 genomes]
rs2869282	0.86[MEX][hapmap]
rs6531795	0.81[AMR][1000 genomes]
rs6531814	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6830662	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6838954	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6853645	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs715751	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7673737	0.81[AMR][1000 genomes]
rs7674448	0.81[AMR][1000 genomes]
rs7688124	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7688707	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7689227	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3367963	chr4:85911017-86246036	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv427685	chr4:86032872-86340548	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86190000-86190400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:86190000-86190800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr4:86190200-86190800	Enhancers	A549	lung

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