Variant report

Variant	rs11728305
Chromosome Location	chr4:56188287-56188288
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4864984	1.00[CHD][hapmap]
rs504836	1.00[CHD][hapmap]
rs534654	1.00[CHD][hapmap]
rs549564	1.00[CHD][hapmap]
rs67180787	0.93[ASN][1000 genomes]
rs7664496	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56181000-56188400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:56186000-56190400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:56186800-56189600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:56187600-56189200	Enhancers	HUVEC	blood vessel
5	chr4:56188000-56189400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:56188000-56189800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:56188200-56190200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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