Variant report

Variant	rs11728403
Chromosome Location	chr4:121065486-121065487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121063487..121066067-chr4:121068181..121070663,2	K562	blood:
2	chr4:121065245..121067614-chr4:121067922..121070893,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11731989	0.95[ASN][1000 genomes]
rs11736813	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12646798	0.85[ASN][1000 genomes]
rs13102180	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13108603	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs13109047	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13112486	0.91[ASN][1000 genomes]
rs13116644	0.88[EUR][1000 genomes]
rs13120704	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13123984	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13142346	0.90[EUR][1000 genomes]
rs13143029	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151713	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1509005	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16997625	0.94[ASN][1000 genomes]
rs17010915	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34651839	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35759882	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4460086	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4594802	0.88[EUR][1000 genomes]
rs56822808	0.94[ASN][1000 genomes]
rs66550227	0.92[EUR][1000 genomes]
rs6835241	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842087	0.91[ASN][1000 genomes]
rs6858797	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7678419	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685077	0.85[ASN][1000 genomes]
rs7686046	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv1845528	chr4:121034480-121185834	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121061000-121065800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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