Variant report

Variant	rs11728420
Chromosome Location	chr4:22524920-22524921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10805235	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1120044	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6853236	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22518800-22532600	Weak transcription	Fetal Lung	lung
2	chr4:22523600-22525200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:22523600-22525200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:22523600-22525400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr4:22523600-22525400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:22523800-22525400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:22523800-22525400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:22524200-22525400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:22524400-22525200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:22524600-22525400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:22524600-22525800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:22524800-22526200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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