Variant report

Variant	rs11728821
Chromosome Location	chr4:111194525-111194526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2529577	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2713952	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4298192	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4698765	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4698766	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533509	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6811819	0.91[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7656124	0.95[CEU][hapmap];0.87[JPT][hapmap]
rs7694909	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111192000-111194600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:111192400-111194600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:111192600-111197000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:111192800-111196400	Weak transcription	NH-A	brain
5	chr4:111192800-111196800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:111193400-111194600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:111193400-111196800	Weak transcription	Osteobl	bone
8	chr4:111193400-111197000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:111193400-111197000	Weak transcription	HSMM	muscle
10	chr4:111193800-111197000	Weak transcription	HSMMtube	muscle
11	chr4:111194200-111194800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:111194200-111194800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:111194400-111194800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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