Variant report

Variant	rs117293766
Chromosome Location	chr8:124285476-124285477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124213969..124215797-chr8:124285287..124287584,2	K562	blood:
2	chr8:124281990..124286115-chr8:124406680..124410809,6	MCF-7	breast:
3	chr8:124273503..124275775-chr8:124284695..124287084,4	MCF-7	breast:
4	chr8:124261353..124265873-chr8:124284184..124288485,10	K562	blood:
5	chr8:124283412..124285759-chr8:124407440..124409463,2	K562	blood:
6	chr8:124284678..124290463-chr8:124295890..124302199,8	K562	blood:
7	chr8:124283753..124285788-chr8:124751343..124753261,2	K562	blood:
8	chr8:124283826..124290020-chr8:124406062..124410538,8	MCF-7	breast:
9	chr8:124185720..124188524-chr8:124283602..124285793,2	K562	blood:
10	chr8:124251855..124253716-chr8:124284789..124287618,4	MCF-7	breast:
11	chr8:124051710..124054469-chr8:124285028..124288032,4	MCF-7	breast:
12	chr8:124251904..124255350-chr8:124283702..124287510,7	MCF-7	breast:
13	chr8:124283849..124288367-chr8:124426037..124430184,7	K562	blood:
14	chr8:124283886..124287542-chr8:124381015..124385016,4	MCF-7	breast:
15	chr8:124250772..124255194-chr8:124284813..124288648,11	K562	blood:
16	chr8:124285038..124289042-chr8:124427512..124430569,10	MCF-7	breast:
17	chr8:124273325..124275716-chr8:124284911..124287516,3	K562	blood:
18	chr8:124243496..124245966-chr8:124284944..124287102,2	MCF-7	breast:
19	chr8:124283412..124288800-chr8:124404176..124410687,11	K562	blood:
20	chr8:124283829..124288838-chr8:124426117..124430573,9	K562	blood:
21	chr8:124250772..124256316-chr8:124284832..124288905,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000222607	Chromatin interaction
ENSG00000253336	Chromatin interaction
ENSG00000156802	Chromatin interaction
ENSG00000156795	Chromatin interaction
ENSG00000156787	Chromatin interaction
ENSG00000189376	Chromatin interaction
ENSG00000136986	Chromatin interaction
ENSG00000165156	Chromatin interaction
ENSG00000204949	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv3405086	chr8:124285396-124287944	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124277400-124285600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:124283200-124287800	Active TSS	GM12878-XiMat	blood
3	chr8:124283200-124288000	Active TSS	K562	blood
4	chr8:124283600-124285800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:124283800-124285600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:124284000-124285600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:124284000-124285600	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr8:124284000-124285600	Flanking Active TSS	Fetal Lung	lung
9	chr8:124284000-124285800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr8:124284000-124285800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:124284000-124285800	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr8:124284000-124285800	Flanking Active TSS	Dnd41	blood
13	chr8:124284000-124286000	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr8:124284000-124286000	Active TSS	Brain Germinal Matrix	brain
15	chr8:124284000-124287400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:124284000-124288000	Active TSS	Ovary	ovary
17	chr8:124284000-124288200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:124284000-124288200	Active TSS	A549	lung
19	chr8:124284200-124285600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr8:124284200-124285600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr8:124284200-124285600	Flanking Active TSS	Fetal Brain Male	brain
22	chr8:124284200-124285600	Flanking Active TSS	Fetal Brain Female	brain
23	chr8:124284200-124285600	Flanking Active TSS	NH-A	brain
24	chr8:124284200-124287800	Active TSS	NHLF	lung
25	chr8:124284200-124288000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:124284200-124288200	Active TSS	Right Atrium	heart
27	chr8:124284200-124288200	Active TSS	Stomach Smooth Muscle	stomach
28	chr8:124284400-124285800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr8:124284400-124285800	Flanking Active TSS	Fetal Heart	heart
30	chr8:124284400-124286000	Flanking Active TSS	Fetal Stomach	stomach
31	chr8:124284400-124288000	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr8:124284400-124288200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:124284400-124288200	Active TSS	Rectal Smooth Muscle	rectum
34	chr8:124284400-124288200	Active TSS	NHDF-Ad	bronchial
35	chr8:124284600-124285600	Enhancers	Small Intestine	intestine
36	chr8:124284600-124285600	Flanking Active TSS	HMEC	breast
37	chr8:124284600-124287200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:124284600-124288200	Active TSS	Aorta	Aorta
39	chr8:124284800-124285600	Enhancers	Primary B cells from cord blood	blood
40	chr8:124284800-124285600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr8:124284800-124285800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr8:124284800-124285800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
43	chr8:124284800-124286000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:124284800-124286000	Flanking Active TSS	Brain Substantia Nigra	brain
45	chr8:124284800-124287400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:124285000-124285600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:124285000-124285600	Flanking Active TSS	Brain Cingulate Gyrus	brain
48	chr8:124285000-124285600	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr8:124285000-124285600	Active TSS	HepG2	liver
50	chr8:124285000-124285600	Flanking Active TSS	HSMMtube	muscle

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