Variant report

Variant	rs11729777
Chromosome Location	chr4:989548-989549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:83)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:83 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr4:989508-989616	K562	blood:	n/a	n/a
2	CTCF	chr4:989399-989699	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr4:989442-989710	HepG2	liver:	n/a	n/a
4	RAD21	chr4:989394-989818	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr4:989540-989690	HCPEpiC	choroid plexus:	n/a	n/a
6	RAD21	chr4:989522-989707	GM12878	blood:	n/a	n/a
7	RAD21	chr4:989482-989736	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr4:989419-989769	H1-hESC	embryonic stem cell:	n/a	n/a
9	YY1	chr4:989495-989656	K562	blood:	n/a	n/a
10	POLR2A	chr4:989249-990040	HepG2	liver:	n/a	n/a
11	POLR2A	chr4:989485-989613	MCF10A-Er-Src	breast:	n/a	n/a
12	CTCF	chr4:989520-989670	AG04449	skin:	n/a	n/a
13	CTCF	chr4:989520-989670	HPF	lung:	n/a	n/a
14	CTCF	chr4:989422-989680	K562	blood:	n/a	n/a
15	TBP	chr4:989533-990452	K562	blood:	n/a	n/a
16	RAD21	chr4:989446-989776	HepG2	liver:	n/a	n/a
17	UBTF	chr4:989536-990433	K562	blood:	n/a	n/a
18	CTCF	chr4:989540-989690	HBMEC	blood vessel:	n/a	n/a
19	CHD2	chr4:989337-990574	K562	blood:	n/a	n/a
20	POLR2A	chr4:989175-990530	K562	blood:	n/a	n/a
21	PML	chr4:989380-990188	K562	blood:	n/a	n/a
22	POLR2A	chr4:989401-990751	K562	blood:	n/a	n/a
23	RAD21	chr4:989504-989761	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr4:989037-991098	K562	blood:	n/a	n/a
25	CTCF	chr4:989520-989670	WERI-Rb-1	eye:	n/a	n/a
26	CTCF	chr4:989520-989670	GM12874	blood:	n/a	n/a
27	RAD21	chr4:989540-989665	K562	blood:	n/a	n/a
28	POLR2A	chr4:989251-990878	K562	blood:	n/a	n/a
29	CTCF	chr4:989540-989690	HEEpiC	esophagus:	n/a	n/a
30	TBL1XR1	chr4:989520-989636	K562	blood:	n/a	n/a
31	RAD21	chr4:989407-989763	SK-N-SH_RA	brain:	n/a	n/a
32	JUN	chr4:989274-990785	K562	blood:	n/a	chr4:990249-990263
33	PML	chr4:989359-990090	K562	blood:	n/a	n/a
34	POLR2A	chr4:989335-990465	K562	blood:	n/a	n/a
35	CTCF	chr4:989540-989690	HPAF	blood vessel:	n/a	n/a
36	MAZ	chr4:989485-990598	K562	blood:	n/a	chr4:990505-990516 chr4:990500-990510
37	POLR2A	chr4:989360-990756	K562	blood:	n/a	n/a
38	CTCF	chr4:989532-989709	Hela-S3	cervix:	n/a	n/a
39	TEAD4	chr4:989469-990233	K562	blood:	n/a	chr4:989646-989655
40	POLR2A	chr4:989322-991744	K562	blood:	n/a	n/a
41	CTCF	chr4:989531-989717	H1-hESC	embryonic stem cell:	n/a	n/a
42	CTCF	chr4:989520-989670	SK-N-SH_RA	brain:	n/a	n/a
43	HEY1	chr4:989292-990552	K562	blood:	n/a	n/a
44	RAD21	chr4:989514-989679	GM12878	blood:	n/a	n/a
45	BHLHE40	chr4:989496-990615	K562	blood:	n/a	chr4:990542-990558
46	POLR2A	chr4:989110-990639	K562	blood:	n/a	n/a
47	RAD21	chr4:989412-989814	A549	lung:	n/a	n/a
48	MAFK	chr4:989514-989554	K562	blood:	n/a	n/a
49	CTCF	chr4:989539-989715	GM12892	blood:	n/a	n/a
50	CTCF	chr4:989460-989610	HBMEC	blood vessel:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:681332..683875-chr4:989273..991539,2	MCF-7	breast:
2	chr4:951436..960651-chr4:984851..992991,17	MCF-7	breast:
3	chr4:957715..960005-chr4:989245..990979,2	MCF-7	breast:

No data

Variant related genes	Relation type
SLC26A1	TF binding region
IDUA	TF binding region
ENSG00000169026	Chromatin interaction
ENSG00000145214	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10516158	1.00[ASW][hapmap];0.82[MKK][hapmap];0.80[TSI][hapmap]
rs11248059	0.83[CEU][hapmap];0.81[ASN][1000 genomes]
rs11248060	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs11248062	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11248063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726637	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11731377	0.82[TSI][hapmap]
rs11736451	0.82[TSI][hapmap]
rs1564282	1.00[ASW][hapmap]
rs17165156	1.00[ASW][hapmap]
rs17783233	0.91[CEU][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs4583705	0.92[CEU][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62294519	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs748483	1.00[ASW][hapmap];0.83[CEU][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:72 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	esv1829397	chr4:655939-1041957	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv878255	chr4:708932-1052488	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv878258	chr4:712222-1058358	Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv878260	chr4:713920-1052488	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	nsv878261	chr4:756686-1047794	Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv1003219	chr4:769894-1105464	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv878263	chr4:771587-1047794	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv432547	chr4:782301-1053930	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
11	nsv878264	chr4:790757-1047794	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv878265	chr4:793929-1024752	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	nsv878266	chr4:793929-1058358	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
14	nsv878269	chr4:795890-1024752	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
15	nsv878270	chr4:798962-1024752	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
16	nsv469998	chr4:809593-1087531	Strong transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
17	nsv878272	chr4:809787-1058358	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
18	nsv1008352	chr4:813393-1035416	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
19	nsv878276	chr4:813393-1047794	Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
20	nsv878277	chr4:813393-1087531	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
21	nsv1012895	chr4:827866-1054874	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
22	nsv536979	chr4:827866-1054874	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
23	nsv536980	chr4:827866-1167377	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
24	nsv878280	chr4:828148-1052488	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
25	nsv878283	chr4:862156-1052488	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
26	nsv878285	chr4:891098-1052488	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
27	nsv1009619	chr4:901897-1215657	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
28	nsv1003876	chr4:927509-1191316	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
29	nsv1000381	chr4:927509-1198766	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
30	nsv870410	chr4:927839-1090974	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
31	nsv878286	chr4:928684-994414	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
32	nsv878287	chr4:928684-1001447	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
33	esv1838544	chr4:939883-1004463	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
34	nsv878288	chr4:939883-1019011	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
35	nsv878289	chr4:939883-1047794	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
36	nsv878290	chr4:939883-1052488	Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
37	nsv878291	chr4:939883-1058358	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
38	nsv878292	chr4:939883-1087531	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
39	nsv878293	chr4:941518-1047794	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
40	nsv878294	chr4:941518-1052488	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
41	nsv878295	chr4:941518-1064116	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
42	esv1846290	chr4:941518-1081307	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
43	nsv461149	chr4:942006-1019011	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
44	nsv593226	chr4:942006-1019011	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
45	nsv878296	chr4:942006-1019011	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
46	nsv878297	chr4:942006-1024752	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
47	esv1799097	chr4:944191-1053162	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
48	nsv878299	chr4:946974-1009420	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
49	nsv878298	chr4:946974-1011115	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
50	nsv878300	chr4:946974-1024752	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:981600-991000	Weak transcription	Right Atrium	heart
2	chr4:981600-991400	Weak transcription	Brain Substantia Nigra	brain
3	chr4:981800-989600	Weak transcription	Primary B cells from cord blood	blood
4	chr4:981800-991200	Weak transcription	Left Ventricle	heart
5	chr4:982000-989800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:982000-990800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:982000-991600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:982200-990600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr4:982200-991400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:984400-990200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:984800-990800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:985000-990600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:985000-990600	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:985200-990400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:985400-989800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:985400-990800	Weak transcription	Brain Angular Gyrus	brain
17	chr4:985600-990000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:985800-990400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:985800-990800	Weak transcription	Brain Anterior Caudate	brain
20	chr4:986000-990200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:986000-990400	Weak transcription	Dnd41	blood
22	chr4:986200-989600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:986200-990400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr4:986400-990400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:986600-989800	Weak transcription	Brain Germinal Matrix	brain
26	chr4:986600-991000	Weak transcription	Right Ventricle	heart
27	chr4:986800-990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:987000-989800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:987200-990200	Weak transcription	Fetal Brain Female	brain
30	chr4:987200-991400	Weak transcription	Lung	lung
31	chr4:987800-989600	Weak transcription	Gastric	stomach
32	chr4:987800-989800	Weak transcription	Spleen	Spleen
33	chr4:987800-990200	Enhancers	Fetal Intestine Large	intestine
34	chr4:987800-990400	Enhancers	Fetal Intestine Small	intestine
35	chr4:988000-990200	Weak transcription	A549	lung
36	chr4:988000-990800	Weak transcription	Pancreas	Pancrea
37	chr4:988200-989600	Enhancers	HepG2	liver
38	chr4:988800-990400	Weak transcription	Liver	Liver
39	chr4:989200-990400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:989200-990800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr4:989400-989800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr4:989400-990800	Flanking Active TSS	K562	blood
43	chr4:989400-991400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links