Variant report

Variant	rs11729834
Chromosome Location	chr4:85283718-85283719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10002239	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020800	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17364803	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60051628	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660879	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs727855	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11729834	DSPP	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85272800-85284600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:85283200-85285200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:85283400-85285000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:85283600-85284200	Bivalent Enhancer	Brain Germinal Matrix	brain
5	chr4:85283600-85284400	Enhancers	Fetal Brain Male	brain
6	chr4:85283600-85284600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:85283600-85284800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:85283600-85284800	Bivalent Enhancer	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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