Variant report

Variant	rs11730157
Chromosome Location	chr4:80679143-80679144
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10008202	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10471030	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112488	0.90[EUR][1000 genomes]
rs11721447	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734828	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502574	0.91[EUR][1000 genomes]
rs12505508	0.90[EUR][1000 genomes]
rs12510495	0.90[EUR][1000 genomes]
rs13102583	0.84[ASN][1000 genomes]
rs13129268	0.84[ASN][1000 genomes]
rs13134009	0.85[ASN][1000 genomes]
rs13134599	0.84[ASN][1000 genomes]
rs13141653	0.84[EUR][1000 genomes]
rs1588361	0.89[EUR][1000 genomes]
rs34624427	0.90[EUR][1000 genomes]
rs36025144	0.91[EUR][1000 genomes]
rs4134362	0.88[EUR][1000 genomes]
rs4502707	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526002	0.95[EUR][1000 genomes]
rs4690121	0.83[EUR][1000 genomes]
rs57058278	0.90[EUR][1000 genomes]
rs62299818	0.91[EUR][1000 genomes]
rs6419234	0.90[EUR][1000 genomes]
rs6815018	0.84[EUR][1000 genomes]
rs6820097	0.91[EUR][1000 genomes]
rs6826816	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851575	0.92[EUR][1000 genomes]
rs7673654	0.91[EUR][1000 genomes]
rs7678506	0.90[EUR][1000 genomes]
rs7684044	0.91[EUR][1000 genomes]
rs7684471	0.82[EUR][1000 genomes]
rs7686303	0.91[EUR][1000 genomes]
rs7695969	0.91[EUR][1000 genomes]
rs7699301	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005152	chr4:80549659-80814456	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1001269	chr4:80620595-80814456	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537149	chr4:80620595-80814456	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829983	chr4:80637742-80834312	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv933370	chr4:80641162-80856064	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80678200-80679400	Enhancers	Placenta	Placenta
2	chr4:80678600-80679400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:80678800-80679400	Enhancers	Duodenum Smooth Muscle	Duodenum

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