Variant report

Variant	rs11730334
Chromosome Location	chr4:86189180-86189181
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86181906..86184238-chr4:86188477..86190210,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10516739	0.87[JPT][hapmap]
rs10516742	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097043	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11097048	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11722654	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11722718	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11726526	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11727618	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11728362	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11730119	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11730800	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11731748	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11731930	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11733099	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11733967	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11734003	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11734764	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11734767	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11735414	0.98[ASN][1000 genomes]
rs12502228	0.87[JPT][hapmap]
rs12512485	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13130662	0.87[JPT][hapmap]
rs17009660	0.91[JPT][hapmap]
rs17009674	0.86[JPT][hapmap]
rs2869279	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2869283	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2869309	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2904044	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4286511	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4619883	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4639062	0.86[JPT][hapmap]
rs55916595	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6821955	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6827277	0.98[ASN][1000 genomes]
rs7349600	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3367963	chr4:85911017-86246036	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv427685	chr4:86032872-86340548	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86188400-86189400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:86189000-86189200	Enhancers	Pancreatic Islets	Pancreatic Islet

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