Variant report

Variant	rs11730691
Chromosome Location	chr4:45084761-45084762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10938386	0.81[EUR][1000 genomes]
rs1159117	0.81[EUR][1000 genomes]
rs1159118	0.81[EUR][1000 genomes]
rs11729006	0.83[EUR][1000 genomes]
rs13106713	0.83[EUR][1000 genomes]
rs13133961	0.81[EUR][1000 genomes]
rs13142361	0.83[EUR][1000 genomes]
rs13146241	0.83[EUR][1000 genomes]
rs1319519	0.81[EUR][1000 genomes]
rs1512316	0.83[EUR][1000 genomes]
rs1512317	0.83[EUR][1000 genomes]
rs1512318	0.83[EUR][1000 genomes]
rs1512319	0.83[EUR][1000 genomes]
rs1512320	0.83[EUR][1000 genomes]
rs1512321	0.83[EUR][1000 genomes]
rs1606314	0.81[EUR][1000 genomes]
rs1606315	0.80[EUR][1000 genomes]
rs1606316	0.81[EUR][1000 genomes]
rs1960115	0.81[EUR][1000 genomes]
rs2048542	0.83[EUR][1000 genomes]
rs2048543	0.83[EUR][1000 genomes]
rs2048544	0.83[EUR][1000 genomes]
rs2048545	0.83[EUR][1000 genomes]
rs2348812	0.81[EUR][1000 genomes]
rs2882028	0.81[EUR][1000 genomes]
rs4305555	0.83[EUR][1000 genomes]
rs4321671	0.81[EUR][1000 genomes]
rs4371653	0.80[EUR][1000 genomes]
rs4404583	0.83[EUR][1000 genomes]
rs4422445	0.83[EUR][1000 genomes]
rs4432781	0.83[EUR][1000 genomes]
rs4444869	0.81[EUR][1000 genomes]
rs4481272	0.81[EUR][1000 genomes]
rs4492039	0.81[EUR][1000 genomes]
rs4493580	0.83[EUR][1000 genomes]
rs4604088	0.83[EUR][1000 genomes]
rs4624697	0.83[EUR][1000 genomes]
rs4642285	0.83[EUR][1000 genomes]
rs4642286	0.83[EUR][1000 genomes]
rs4643858	0.83[EUR][1000 genomes]
rs62409870	0.81[EUR][1000 genomes]
rs6414672	0.81[EUR][1000 genomes]
rs6414673	0.83[EUR][1000 genomes]
rs6447414	0.81[EUR][1000 genomes]
rs6447417	0.83[EUR][1000 genomes]
rs6447425	0.83[EUR][1000 genomes]
rs6447426	0.83[EUR][1000 genomes]
rs6447429	0.81[EUR][1000 genomes]
rs6815681	0.82[EUR][1000 genomes]
rs6815872	0.83[EUR][1000 genomes]
rs6817044	0.81[EUR][1000 genomes]
rs6855504	0.81[EUR][1000 genomes]
rs6856726	0.81[EUR][1000 genomes]
rs7654727	0.81[EUR][1000 genomes]
rs7656136	0.82[EUR][1000 genomes]
rs7659477	0.81[EUR][1000 genomes]
rs7669613	0.83[EUR][1000 genomes]
rs7677867	0.83[EUR][1000 genomes]
rs7690331	0.81[EUR][1000 genomes]
rs996002	0.83[EUR][1000 genomes]
rs996003	0.83[EUR][1000 genomes]
rs9992572	0.83[EUR][1000 genomes]
rs9999206	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3361192	chr4:45084732-45085183	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45082600-45085000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:45082800-45085600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:45084600-45085800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links