Variant report

Variant	rs117311305
Chromosome Location	chr8:19174242-19174243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:19174042-19174264	Hela-S3	cervix:	n/a	n/a
2	GATA3	chr8:19174195-19174501	MCF-7	breast:	n/a	chr8:19174469-19174478
3	GATA3	chr8:19174130-19174585	T-47D	breast:	n/a	chr8:19174469-19174478
4	GATA3	chr8:19174060-19174643	MCF-7	breast:	n/a	chr8:19174469-19174478
5	CTCF	chr8:19174140-19174290	HAc	cerebellar:	n/a	n/a
6	GATA3	chr8:19174078-19174561	T-47D	breast:	n/a	chr8:19174469-19174478

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19155044..19157820-chr8:19172820..19174971,2	MCF-7	breast:
2	chr8:19149962..19152072-chr8:19173164..19175700,2	MCF-7	breast:

Variant related genes	Relation type
SH2D4A	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026466	chr8:18433493-19271274	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv539520	chr8:18433493-19271274	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1015395	chr8:18489538-19370258	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv429907	chr8:18578720-19398220	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv917232	chr8:18585309-19208665	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv890610	chr8:18749120-19260599	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv949745	chr8:18826830-19363963	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv1016482	chr8:18834807-19339487	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv890614	chr8:18838764-19274793	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv533109	chr8:18845845-19456780	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv1016993	chr8:18855623-19311731	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
12	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv890615	chr8:18989735-19181921	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv890616	chr8:18989735-19197809	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv1033229	chr8:19081684-19271274	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv890621	chr8:19173379-19211220	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19172000-19179600	Weak transcription	Spleen	Spleen
2	chr8:19172200-19179800	Weak transcription	Left Ventricle	heart
3	chr8:19172200-19182600	Weak transcription	Esophagus	oesophagus
4	chr8:19172400-19174400	Enhancers	Ovary	ovary
5	chr8:19172400-19175800	Enhancers	Pancreas	Pancrea
6	chr8:19172400-19176000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:19172400-19176200	Weak transcription	Fetal Lung	lung
8	chr8:19172400-19176200	Enhancers	Stomach Mucosa	stomach
9	chr8:19172400-19176800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:19172400-19176800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:19172400-19177000	Weak transcription	Adipose Nuclei	Adipose
12	chr8:19172400-19180600	Weak transcription	Fetal Stomach	stomach
13	chr8:19172400-19184800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:19172400-19187800	Weak transcription	Fetal Heart	heart
15	chr8:19172400-19188000	Weak transcription	Right Ventricle	heart
16	chr8:19172400-19202400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:19172600-19181200	Weak transcription	NH-A	brain
18	chr8:19172600-19202800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:19172800-19174400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:19172800-19176800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:19172800-19176800	Weak transcription	Fetal Intestine Large	intestine
22	chr8:19172800-19181600	Weak transcription	Placenta	Placenta
23	chr8:19173000-19176000	Enhancers	HepG2	liver
24	chr8:19173000-19176800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:19173200-19174600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:19173200-19175600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:19173200-19176200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr8:19173400-19174600	Enhancers	Gastric	stomach
29	chr8:19173400-19175200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:19173600-19174400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr8:19173600-19176000	Enhancers	Liver	Liver
32	chr8:19173600-19178800	Weak transcription	NHLF	lung
33	chr8:19173600-19180600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr8:19173600-19254800	Weak transcription	Colonic Mucosa	Colon
35	chr8:19173800-19174800	Genic enhancers	Hela-S3	cervix
36	chr8:19173800-19175000	Weak transcription	NHDF-Ad	bronchial
37	chr8:19173800-19185200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr8:19173800-19205400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:19174000-19174400	Enhancers	Small Intestine	intestine
40	chr8:19174000-19174400	Genic enhancers	Osteobl	bone
41	chr8:19174000-19178200	Weak transcription	NHEK	skin
42	chr8:19174000-19223600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr8:19174200-19174400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:19174200-19175800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:19174200-19176800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr8:19174200-19177000	Genic enhancers	A549	lung
47	chr8:19174200-19177200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:19174200-19177800	Weak transcription	Fetal Intestine Small	intestine
49	chr8:19174200-19178200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr8:19174200-19179200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links