Variant report

Variant	rs11731772
Chromosome Location	chr4:73682532-73682533
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10010257	0.91[EUR][1000 genomes]
rs1461526	0.94[EUR][1000 genomes]
rs17779822	0.83[EUR][1000 genomes]
rs2217049	0.84[EUR][1000 genomes]
rs315321	0.91[EUR][1000 genomes]
rs315337	0.94[EUR][1000 genomes]
rs72661015	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73681000-73684000	Enhancers	Osteobl	bone
2	chr4:73681200-73686600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:73681600-73682600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:73682000-73683200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:73682000-73683600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:73682000-73683800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:73682200-73683000	Enhancers	NH-A	brain
8	chr4:73682400-73683000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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