Variant report

Variant	rs11731868
Chromosome Location	chr4:57895214-57895215
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57893930..57897148-chr4:57898459..57902264,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10023088	0.81[AMR][1000 genomes]
rs1107674	0.95[JPT][hapmap]
rs12650737	0.81[AMR][1000 genomes]
rs4865169	0.81[AMR][1000 genomes]
rs9918067	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57846800-57900000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:57848600-57900000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:57849000-57900000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:57850600-57899400	Strong transcription	Fetal Thymus	thymus
5	chr4:57850800-57899400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:57851000-57899200	Strong transcription	Primary T cells from cord blood	blood
7	chr4:57851000-57899400	Strong transcription	Duodenum Mucosa	Duodenum
8	chr4:57851200-57897200	Strong transcription	Fetal Intestine Large	intestine
9	chr4:57851600-57899400	Strong transcription	Placenta	Placenta
10	chr4:57851800-57899400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:57851800-57899400	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:57851800-57899400	Strong transcription	Liver	Liver
13	chr4:57851800-57899600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:57852000-57898200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr4:57852200-57899000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:57852200-57899400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:57852600-57899400	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:57856000-57899400	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:57856800-57900000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr4:57858200-57899800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr4:57858400-57899800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:57858400-57899800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:57859000-57898000	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr4:57859400-57898600	Strong transcription	Dnd41	blood
25	chr4:57859600-57897800	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:57860200-57898800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr4:57862200-57899400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:57862200-57900000	Strong transcription	Fetal Muscle Leg	muscle
29	chr4:57863400-57907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:57870400-57899800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr4:57870600-57897200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr4:57870600-57899000	Strong transcription	Primary B cells from peripheral blood	blood
33	chr4:57870800-57897200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr4:57871000-57899600	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:57871800-57897800	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:57879400-57899800	Strong transcription	Fetal Kidney	kidney
37	chr4:57883200-57898000	Strong transcription	Brain Germinal Matrix	brain
38	chr4:57883200-57899600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr4:57885600-57898200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:57885800-57898200	Strong transcription	Fetal Lung	lung
41	chr4:57886000-57897000	Strong transcription	HepG2	liver
42	chr4:57886800-57896600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr4:57887000-57900000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr4:57887000-57900200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:57887200-57899800	Strong transcription	Adipose Nuclei	Adipose
46	chr4:57887200-57900000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:57887400-57900400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:57888000-57898800	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr4:57889000-57897600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:57889000-57910200	Weak transcription	Esophagus	oesophagus

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