Variant report

Variant	rs11731971
Chromosome Location	chr4:174116455-174116456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174111282..174114186-chr4:174114823..174117851,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11728181	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732929	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734195	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17324192	1.00[ASN][1000 genomes]
rs4696055	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174104000-174157200	Weak transcription	Ovary	ovary
2	chr4:174107000-174117800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:174107400-174120800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:174108800-174126800	Weak transcription	Spleen	Spleen
5	chr4:174109000-174116600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:174110200-174118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:174110600-174117000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:174111000-174116800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:174111200-174116800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:174112600-174131200	Weak transcription	Colonic Mucosa	Colon
11	chr4:174112800-174122800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:174112800-174126200	Weak transcription	Pancreas	Pancrea
13	chr4:174112800-174126400	Weak transcription	Gastric	stomach
14	chr4:174112800-174127000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:174112800-174140000	Weak transcription	Aorta	Aorta
16	chr4:174113000-174120400	Weak transcription	HSMMtube	muscle
17	chr4:174113400-174117400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:174113400-174132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:174113800-174126200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:174113800-174138000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:174114000-174123600	Weak transcription	Fetal Intestine Large	intestine
22	chr4:174114000-174125400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr4:174114000-174130800	Weak transcription	Brain Substantia Nigra	brain
24	chr4:174114200-174116600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:174114200-174116600	Weak transcription	HSMM	muscle
26	chr4:174114200-174120400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:174114200-174120400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:174114200-174123200	Weak transcription	Fetal Intestine Small	intestine
29	chr4:174114200-174125200	Weak transcription	Small Intestine	intestine
30	chr4:174114200-174125600	Weak transcription	A549	lung
31	chr4:174114200-174125800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:174114200-174126200	Weak transcription	Esophagus	oesophagus
33	chr4:174114200-174127000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr4:174114200-174157800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr4:174114400-174124200	Weak transcription	Fetal Thymus	thymus
36	chr4:174114400-174125200	Weak transcription	Primary T cells from cord blood	blood
37	chr4:174114600-174155000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr4:174115200-174127200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr4:174115400-174116800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr4:174115400-174117000	Enhancers	Primary B cells from peripheral blood	blood
41	chr4:174115400-174117000	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr4:174115400-174117000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:174115400-174117000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:174115600-174116800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:174115600-174117000	Enhancers	Primary hematopoietic stem cells	blood
46	chr4:174116000-174117000	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr4:174116000-174117000	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr4:174116200-174116600	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr4:174116200-174117000	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr4:174116200-174117200	Genic enhancers	Dnd41	blood

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