Variant report

Variant	rs117326293
Chromosome Location	chr10:97325514-97325515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97321491..97323159-chr10:97323965..97326308,2	K562	blood:
2	chr10:97249016..97250688-chr10:97324094..97327075,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv524227	chr10:97324127-97328227	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97321600-97325600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:97321600-97327400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:97321600-97327600	Weak transcription	Right Atrium	heart
4	chr10:97321600-97328000	Weak transcription	Lung	lung
5	chr10:97321600-97329200	Enhancers	Placenta	Placenta
6	chr10:97321600-97332200	Weak transcription	Right Ventricle	heart
7	chr10:97321800-97325600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:97321800-97325800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:97321800-97327800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:97321800-97331800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:97321800-97332200	Weak transcription	Brain Anterior Caudate	brain
12	chr10:97322000-97327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:97322400-97328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:97322400-97328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:97323000-97328000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:97324600-97326200	Enhancers	Fetal Lung	lung
17	chr10:97324600-97326200	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:97324600-97326400	Enhancers	Fetal Stomach	stomach
19	chr10:97324800-97326600	Enhancers	Colon Smooth Muscle	Colon
20	chr10:97325000-97326600	Enhancers	HepG2	liver
21	chr10:97325200-97325600	Weak transcription	Hela-S3	cervix
22	chr10:97325400-97325600	Enhancers	Stomach Smooth Muscle	stomach
23	chr10:97325400-97325800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:97325400-97326200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:97325400-97326200	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links