Variant report

Variant	rs11734145
Chromosome Location	chr4:119197735-119197736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:119197600-119198141	HepG2	liver:	n/a	n/a
2	ARID3A	chr4:119197553-119198416	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119150653..119153442-chr4:119197486..119199123,2	K562	blood:

Variant related genes	Relation type
SNHG8	TF binding region

Extended variants
information (count: 103 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10001926	0.81[ASN][1000 genomes]
rs10002634	0.93[ASN][1000 genomes]
rs10008013	0.93[ASN][1000 genomes]
rs10014055	0.93[ASN][1000 genomes]
rs10014957	0.93[ASN][1000 genomes]
rs10016206	0.93[ASN][1000 genomes]
rs10016301	0.90[ASN][1000 genomes]
rs10018844	0.93[ASN][1000 genomes]
rs10024837	0.93[ASN][1000 genomes]
rs10025690	0.93[ASN][1000 genomes]
rs10033927	0.93[ASN][1000 genomes]
rs10213280	0.93[ASN][1000 genomes]
rs1028091	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1045817	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721634	0.86[ASN][1000 genomes]
rs11723877	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11723996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726746	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11726838	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11727684	0.93[ASN][1000 genomes]
rs11727817	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11728941	0.93[ASN][1000 genomes]
rs11730327	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11730687	0.93[ASN][1000 genomes]
rs11731179	0.86[ASN][1000 genomes]
rs11930782	0.93[ASN][1000 genomes]
rs11933280	0.93[ASN][1000 genomes]
rs11934183	0.93[ASN][1000 genomes]
rs11944227	0.93[ASN][1000 genomes]
rs11945329	0.93[ASN][1000 genomes]
rs11945537	0.93[ASN][1000 genomes]
rs11945882	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11947244	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11947630	0.93[ASN][1000 genomes]
rs13114867	0.90[ASN][1000 genomes]
rs13129847	0.90[ASN][1000 genomes]
rs13435006	0.93[ASN][1000 genomes]
rs1403845	0.93[ASN][1000 genomes]
rs1403846	0.93[ASN][1000 genomes]
rs1523744	0.93[ASN][1000 genomes]
rs1523745	0.93[ASN][1000 genomes]
rs1523746	0.93[ASN][1000 genomes]
rs1589718	0.90[ASN][1000 genomes]
rs17515832	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17516430	0.86[ASN][1000 genomes]
rs17594054	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17594243	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1996725	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2030633	0.93[ASN][1000 genomes]
rs2030634	0.93[ASN][1000 genomes]
rs2204269	0.93[ASN][1000 genomes]
rs2271577	0.93[ASN][1000 genomes]
rs2271578	0.93[ASN][1000 genomes]
rs2272160	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396217	0.93[ASN][1000 genomes]
rs28508556	0.93[ASN][1000 genomes]
rs28661939	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3817274	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4546315	0.93[ASN][1000 genomes]
rs56007507	0.93[ASN][1000 genomes]
rs56258393	0.93[ASN][1000 genomes]
rs56305917	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56339949	0.93[ASN][1000 genomes]
rs56390335	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57605165	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58798110	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60858456	0.86[ASN][1000 genomes]
rs61342457	0.93[ASN][1000 genomes]
rs61443542	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62326151	0.93[ASN][1000 genomes]
rs6534088	0.86[ASN][1000 genomes]
rs6822408	0.86[ASN][1000 genomes]
rs6822996	0.93[ASN][1000 genomes]
rs6842372	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6842689	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6853879	0.90[ASN][1000 genomes]
rs6855052	0.93[ASN][1000 genomes]
rs6855536	0.84[ASN][1000 genomes]
rs6856076	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71608347	0.90[ASN][1000 genomes]
rs71608349	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72907147	0.86[ASN][1000 genomes]
rs72907175	0.86[ASN][1000 genomes]
rs72909175	0.93[ASN][1000 genomes]
rs72909186	0.93[ASN][1000 genomes]
rs72917104	0.93[ASN][1000 genomes]
rs72917146	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72917175	0.93[ASN][1000 genomes]
rs72917179	0.93[ASN][1000 genomes]
rs7661522	0.90[ASN][1000 genomes]
rs7685455	0.93[ASN][1000 genomes]
rs9992827	0.90[ASN][1000 genomes]
rs9996753	0.93[ASN][1000 genomes]
rs9996762	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv34038	chr4:119035124-119455391	Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1001138	chr4:119095147-119461837	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv537230	chr4:119095147-119461837	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1002771	chr4:119125361-119571237	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv1003731	chr4:119138262-119506032	Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv1794655	chr4:119170156-119212103	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11734145	SNHG8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119187200-119199000	Weak transcription	Colonic Mucosa	Colon
2	chr4:119187200-119199400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:119195000-119199000	Weak transcription	Osteobl	bone
4	chr4:119195400-119198200	Weak transcription	GM12878-XiMat	blood
5	chr4:119195400-119199000	Weak transcription	Primary T cells from cord blood	blood
6	chr4:119196800-119198200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:119196800-119198400	Enhancers	Fetal Intestine Small	intestine
8	chr4:119196800-119199000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:119197000-119198200	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr4:119197000-119198400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:119197000-119198400	Enhancers	Fetal Intestine Large	intestine
12	chr4:119197000-119198600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:119197000-119199000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr4:119197200-119197800	Flanking Active TSS	Liver	Liver
15	chr4:119197200-119199000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:119197400-119198600	Flanking Active TSS	HepG2	liver
17	chr4:119197600-119197800	Enhancers	Duodenum Mucosa	Duodenum
18	chr4:119197600-119197800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr4:119197600-119198400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:119197600-119199000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:119197600-119199200	Weak transcription	Pancreas	Pancrea
22	chr4:119197600-119199400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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