Variant report

Variant	rs11734242
Chromosome Location	chr4:151292014-151292015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11723215	0.83[AMR][1000 genomes]
rs11724676	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11726346	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11728230	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11728745	0.85[AFR][1000 genomes]
rs11729564	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11733079	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11734641	0.85[AFR][1000 genomes]
rs11734774	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11736470	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11736546	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11737450	0.85[AFR][1000 genomes]
rs11930294	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11933088	0.86[AMR][1000 genomes]
rs11934033	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11946076	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11946787	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1507190	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17504117	0.84[AMR][1000 genomes]
rs17504373	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17588629	0.81[AMR][1000 genomes]
rs17588916	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2056457	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs35750119	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4370117	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4696084	0.85[AFR][1000 genomes]
rs4696134	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4696299	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4696320	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55770979	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55795432	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55889963	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56004102	0.85[AFR][1000 genomes]
rs56397289	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56398631	0.85[AFR][1000 genomes]
rs56401050	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58138000	0.81[AMR][1000 genomes]
rs59713336	0.81[AMR][1000 genomes]
rs60459852	0.81[AMR][1000 genomes]
rs60557777	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61269060	0.85[AFR][1000 genomes]
rs62346985	0.81[AMR][1000 genomes]
rs62346990	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs62346996	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62347033	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62347034	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62347035	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62347038	0.88[AMR][1000 genomes]
rs62347043	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62347044	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62348573	0.88[AMR][1000 genomes]
rs62348574	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6834124	0.81[AMR][1000 genomes]
rs72734403	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72734450	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs952098	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv880260	chr4:151214038-151331191	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11734242	LRBA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151243000-151312000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:151244200-151300600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:151262400-151311200	Weak transcription	Primary T cells from cord blood	blood
4	chr4:151268800-151293800	Weak transcription	Fetal Intestine Small	intestine
5	chr4:151269800-151300600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:151272000-151293800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:151272000-151298600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:151272000-151371400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:151272400-151294000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:151279200-151298000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:151285600-151297600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:151286600-151355600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:151289200-151300200	Weak transcription	Fetal Kidney	kidney
14	chr4:151289400-151297000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:151290200-151306400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:151290200-151367400	Weak transcription	K562	blood
17	chr4:151290600-151294400	Weak transcription	Fetal Lung	lung
18	chr4:151291200-151293600	Weak transcription	Fetal Stomach	stomach
19	chr4:151291200-151301200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:151291400-151298400	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:151291800-151314200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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