Variant report

Variant	rs11735654
Chromosome Location	chr4:56438161-56438162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56414679..56416401-chr4:56437993..56440947,2	K562	blood:
2	chr4:56434841..56438469-chr4:56815010..56817687,3	K562	blood:

Variant related genes	Relation type
ENSG00000174799	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11133406	0.86[AMR][1000 genomes]
rs11722277	0.95[EUR][1000 genomes]
rs11722402	0.93[AMR][1000 genomes]
rs11722415	0.95[EUR][1000 genomes]
rs11722645	0.93[AMR][1000 genomes]
rs11723011	0.86[AMR][1000 genomes]
rs11723580	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11725081	0.95[EUR][1000 genomes]
rs11725422	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11725439	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11725592	0.95[EUR][1000 genomes]
rs11725738	0.95[EUR][1000 genomes]
rs11727248	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11727450	0.86[AMR][1000 genomes]
rs11727729	0.93[AMR][1000 genomes]
rs11727831	0.93[AMR][1000 genomes]
rs11728776	0.86[AMR][1000 genomes]
rs11729092	0.95[EUR][1000 genomes]
rs11729111	0.86[AMR][1000 genomes]
rs11732078	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11732684	1.00[CEU][hapmap]
rs11733959	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11734493	0.86[AMR][1000 genomes]
rs11735358	0.86[AMR][1000 genomes]
rs11735815	0.86[AMR][1000 genomes]
rs12499085	0.86[AMR][1000 genomes]
rs12500147	0.86[AMR][1000 genomes]
rs12502173	0.86[AMR][1000 genomes]
rs12503046	0.86[AMR][1000 genomes]
rs12503479	0.86[AMR][1000 genomes]
rs12506506	0.86[AMR][1000 genomes]
rs12507525	0.86[AMR][1000 genomes]
rs12508869	0.86[AMR][1000 genomes]
rs12509559	0.86[AMR][1000 genomes]
rs1522113	0.95[EUR][1000 genomes]
rs17085763	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2412668	0.93[AMR][1000 genomes]
rs28409498	0.95[EUR][1000 genomes]
rs28450557	0.95[EUR][1000 genomes]
rs34897046	0.95[EUR][1000 genomes]
rs35133040	0.95[EUR][1000 genomes]
rs35256215	0.86[AMR][1000 genomes]
rs35793438	0.95[EUR][1000 genomes]
rs55665531	0.93[AMR][1000 genomes]
rs55885309	0.86[AMR][1000 genomes]
rs56096459	0.86[AMR][1000 genomes]
rs56260406	0.86[AMR][1000 genomes]
rs73236154	0.93[AMR][1000 genomes]
rs73236155	0.93[AMR][1000 genomes]
rs73236156	0.93[AMR][1000 genomes]
rs73236157	0.93[AMR][1000 genomes]
rs73236159	0.93[AMR][1000 genomes]
rs73236160	0.93[AMR][1000 genomes]
rs73236161	0.93[AMR][1000 genomes]
rs73236162	0.93[AMR][1000 genomes]
rs73236163	0.93[AMR][1000 genomes]
rs73236164	0.93[AMR][1000 genomes]
rs73236166	0.86[AMR][1000 genomes]
rs73236167	0.93[AMR][1000 genomes]
rs73236168	0.86[AMR][1000 genomes]
rs73236171	0.86[AMR][1000 genomes]
rs73236173	0.86[AMR][1000 genomes]
rs73236174	0.86[AMR][1000 genomes]
rs73236175	0.86[AMR][1000 genomes]
rs73236178	0.86[AMR][1000 genomes]
rs73236179	0.86[AMR][1000 genomes]
rs73236181	0.86[AMR][1000 genomes]
rs73236182	0.86[AMR][1000 genomes]
rs73236183	0.86[AMR][1000 genomes]
rs73236184	0.86[AMR][1000 genomes]
rs73236185	0.86[AMR][1000 genomes]
rs73236186	0.86[AMR][1000 genomes]
rs73236187	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56432000-56442000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:56435200-56440600	Weak transcription	K562	blood
3	chr4:56435600-56441400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:56437400-56438600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:56437800-56438200	Enhancers	Monocytes-CD14+_RO01746	blood

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