Variant report

Variant	rs11735774
Chromosome Location	chr4:62556872-62556873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11731776	0.85[EUR][1000 genomes]
rs11731846	0.96[EUR][1000 genomes]
rs11937063	0.83[EUR][1000 genomes]
rs11938643	0.88[EUR][1000 genomes]
rs1497918	0.83[JPT][hapmap]
rs2055265	0.83[JPT][hapmap]
rs4860096	0.83[JPT][hapmap]
rs56909451	0.95[EUR][1000 genomes]
rs58046346	0.95[EUR][1000 genomes]
rs60542626	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836698	0.83[JPT][hapmap]
rs72638531	0.88[EUR][1000 genomes]
rs72638536	0.90[EUR][1000 genomes]
rs72638541	0.90[EUR][1000 genomes]
rs72638542	0.95[EUR][1000 genomes]
rs7666147	0.88[JPT][hapmap]
rs9998456	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv968064	chr4:62554545-62557658	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62549200-62560400	Weak transcription	Fetal Stomach	stomach
2	chr4:62556800-62557200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:62556800-62557600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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