Variant report

Variant	rs117359404
Chromosome Location	chr11:76490282-76490283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:76490140-76490290	BJ	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:76489897..76492683-chr11:76518337..76520113,2	MCF-7	breast:
2	chr11:76487745..76490433-chr22:18912039..18914397,2	MCF-7	breast:
3	chr11:76490271..76492919-chr11:76570565..76573287,2	MCF-7	breast:
4	chr11:76448469..76450791-chr11:76488926..76490777,2	K562	blood:

Variant related genes	Relation type
TSKU	TF binding region
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76482800-76492400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:76485600-76492200	Weak transcription	Ovary	ovary
3	chr11:76486000-76492200	Weak transcription	Liver	Liver
4	chr11:76486400-76491600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:76487200-76491400	ZNF genes & repeats	A549	lung
6	chr11:76487800-76492200	Weak transcription	NHEK	skin
7	chr11:76488000-76492200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:76488400-76492000	Enhancers	Adipose Nuclei	Adipose
9	chr11:76488400-76493400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:76488600-76492200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:76488800-76492000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:76489000-76491000	Weak transcription	HepG2	liver
13	chr11:76489200-76490800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr11:76489200-76491600	Weak transcription	Fetal Intestine Small	intestine
15	chr11:76489200-76491800	Weak transcription	HMEC	breast
16	chr11:76489400-76490400	Enhancers	HSMMtube	muscle
17	chr11:76489600-76491600	Weak transcription	Fetal Lung	lung
18	chr11:76489800-76491000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:76490000-76490600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
20	chr11:76490000-76490800	Weak transcription	Esophagus	oesophagus
21	chr11:76490200-76490400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:76490200-76491400	Weak transcription	Fetal Stomach	stomach
23	chr11:76490200-76491800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:76490200-76491800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:76490200-76491800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:76490200-76491800	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:76490200-76492000	Weak transcription	Fetal Brain Female	brain

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