Variant report

Variant	rs11737379
Chromosome Location	chr4:147377800-147377801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147377292..147378986-chr4:147382091..147384847,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10000604	0.82[EUR][1000 genomes]
rs10020390	0.83[EUR][1000 genomes]
rs10031151	0.82[EUR][1000 genomes]
rs10032409	0.82[EUR][1000 genomes]
rs11100924	0.82[EUR][1000 genomes]
rs11725876	0.82[EUR][1000 genomes]
rs11733337	0.88[AFR][1000 genomes]
rs11930791	0.82[EUR][1000 genomes]
rs11944863	0.82[ASN][1000 genomes]
rs1344140	0.87[AFR][1000 genomes]
rs1574454	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17021440	0.82[EUR][1000 genomes]
rs2630295	0.82[EUR][1000 genomes]
rs2630305	0.82[EUR][1000 genomes]
rs2679141	0.82[EUR][1000 genomes]
rs2679156	0.97[EUR][1000 genomes]
rs2679157	0.98[EUR][1000 genomes]
rs2679158	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2679159	0.97[EUR][1000 genomes]
rs2679161	0.96[EUR][1000 genomes]
rs3849035	0.82[EUR][1000 genomes]
rs3849036	0.90[AFR][1000 genomes]
rs3849038	0.88[ASN][1000 genomes]
rs4835036	0.96[EUR][1000 genomes]
rs4835038	0.90[AFR][1000 genomes]
rs4835304	0.82[EUR][1000 genomes]
rs4835306	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55844140	0.82[EUR][1000 genomes]
rs55971059	0.82[ASN][1000 genomes]
rs56305627	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537418	0.81[EUR][1000 genomes]
rs66989520	0.96[ASN][1000 genomes]
rs68027160	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6826676	0.82[EUR][1000 genomes]
rs6843145	0.82[EUR][1000 genomes]
rs6858794	0.82[EUR][1000 genomes]
rs72729852	0.82[EUR][1000 genomes]
rs72729902	0.81[ASN][1000 genomes]
rs7663212	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1033640	chr4:147232217-147531881	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv917053	chr4:147265436-147499653	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023868	chr4:147265443-147531626	Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv537293	chr4:147265443-147531626	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv428453	chr4:147335953-147457115	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147364600-147388000	Weak transcription	NHEK	skin
2	chr4:147364800-147402200	Weak transcription	Thymus	Thymus
3	chr4:147366600-147379200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:147367200-147385000	Weak transcription	Left Ventricle	heart
5	chr4:147370800-147388800	Weak transcription	Psoas Muscle	Psoas
6	chr4:147371800-147379200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:147372000-147402400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:147372200-147389000	Weak transcription	Primary B cells from cord blood	blood
9	chr4:147372800-147379200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:147373200-147378800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:147373200-147379000	Weak transcription	Primary T cells from cord blood	blood
12	chr4:147373200-147379200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:147373200-147394000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:147375200-147379800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:147375200-147386400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:147377600-147377800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:147377600-147380200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr4:147377800-147378000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:147377800-147378000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:147377800-147378000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:147377800-147378000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:147377800-147378000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:147377800-147378200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr4:147377800-147378200	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links