Variant report

Variant	rs11737515
Chromosome Location	chr4:89777379-89777380
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10516823	0.90[ASN][1000 genomes]
rs11724744	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11732471	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17815912	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1979290	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2869964	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs922026	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89752000-89778800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:89754600-89779600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:89764400-89779400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:89765000-89779400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:89765000-89780400	Weak transcription	Ovary	ovary
6	chr4:89765000-89780600	Weak transcription	Left Ventricle	heart
7	chr4:89765200-89778200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:89765200-89780400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:89765400-89780400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:89765400-89780800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:89766000-89780400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:89767600-89779800	Weak transcription	Fetal Stomach	stomach
13	chr4:89767800-89777600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:89767800-89779600	Weak transcription	Adipose Nuclei	Adipose
15	chr4:89767800-89780400	Weak transcription	Fetal Kidney	kidney
16	chr4:89767800-89780800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:89768000-89779600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:89768800-89789400	Weak transcription	Fetal Intestine Small	intestine
19	chr4:89771000-89803200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:89771200-89779600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:89772200-89779800	Weak transcription	Placenta	Placenta
22	chr4:89773600-89784200	Weak transcription	Gastric	stomach
23	chr4:89775400-89780400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:89776400-89778800	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links